Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions - Wikidata - awgldk - TriplyDB

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

http://www.wikidata.org/entity/Q35075670

about

Structural recognition mechanisms between human Src homology domain 3 (SH3) and ALG-2-interacting protein X (Alix)Surfing the Protein-Protein Interaction Surface Using Docking Methods: Application to the Design of PPI Inhibitors Proofreading exonuclease on a tether: the complex between the E. coli DNA polymerase III subunits α, epsilon, θ and β reveals a highly flexible arrangement of the proofreading domain.Structure of the Mycosin-1 Protease from the Mycobacterial ESX-1 Protein Type VII Secretion System A Redox 2-Cys Mechanism Regulates the Catalytic Activity of Divergent Cyclophilins A unified conformational selection and induced fit approach to protein-peptide docking Insight into PreImplantation Factor (PIF*) mechanism for embryo protection and development: target oxidative stress and protein misfolding (PDI and HSP) through essential RIKP [corrected] binding site Biochemical evidence for relaxed substrate specificity of Nα-acetyltransferase (Rv3420c/rimI) of Mycobacterium tuberculosis Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)Molecular basis of interactions between SH3 domain-containing proteins and the proline-rich region of the ubiquitin ligase Itch Regulation of the PI3K pathway through a p85α monomer-homodimer equilibrium Increased β-haemolytic group A streptococcal M6 serotype and streptodornase B-specific cellular immune responses in Swedish narcolepsy cases.Recent advances in sequence-based protein structure prediction.Peptide aptamers define distinct EB1- and EB3-binding motifs and interfere with microtubule dynamics.Proteomic protease specificity profiling of clostridial collagenases reveals their intrinsic nature as dedicated degraders of collagen.Evaluation of a DLA-79 allele associated with multiple immune-mediated diseases in dogs.Interactions outside the proteinase-binding loop contribute significantly to the inhibition of activated coagulation factor XII by its canonical inhibitor from corn.Antagonistic action on NMDA/GluN2B mediated currents of two peptides that were conantokin-G structure-based designed In silico analysis and experimental verification of OSR1 kinase - Peptide interaction.Immunization with a functional protein complex required for erythrocyte invasion protects against lethal malaria.Cleavage specificity analysis of six type II transmembrane serine proteases (TTSPs) using PICS with proteome-derived peptide libraries Break CDK2/Cyclin E1 interface allosterically with small peptides.Molecular insights into the recognition of N-terminal histone modifications by the BRPF1 bromodomain.Allosteric inhibition of the neuropeptidase neurolysin.Molecular basis of calpain cleavage and inactivation of the sodium-calcium exchanger 1 in heart failure.Crystal structure of calcium binding protein-5 from Entamoeba histolytica and its involvement in initiation of phagocytosis of human erythrocytes.Predicting binding within disordered protein regions to structurally characterised peptide-binding domains.Ligand recognition by the TPR domain of the import factor Toc64 from Arabidopsis thaliana.Survivin-specific T cell receptor targets tumor but not T cells.In Silico Generation of Peptides by Replica Exchange Monte Carlo: Docking-Based Optimization of Maltose-Binding-Protein Ligands.GalaxyPepDock: a protein-peptide docking tool based on interaction similarity and energy optimization.New Infestin-4 Mutants with Increased Selectivity against Factor XIIa.A potential therapeutic peptide-based neutralizer that potently inhibits Shiga toxin 2 in vitro and in vivo.Prediction and verification of novel peptide targets of protein tyrosine phosphatase 1B.PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides.Structural basis of Ac-SDKP hydrolysis by Angiotensin-I converting enzyme.Structure and Mechanism of a Viral Collagen Prolyl Hydroxylase Do GGA adaptors bind internal DXXLL motifs?Broadly targeted CD8⁺ T cell responses restricted by major histocompatibility complex E.Design of a RANK-Mimetic Peptide Inhibitor of Osteoclastogenesis with Enhanced RANKL-Binding Affinity

P2860

Q24336937-6E77AC35-FC4F-4FB7-9FFD-99CAFDEC901A Q26823990-39B8DA60-2EFA-4E0F-88BC-E78F4361061C Q27677329-79DB87D6-208A-49A3-98D6-A544CBA892B0 Q27677641-E230CF2E-B310-4825-8E6D-81D701D04834 Q27678335-4CB8319A-C5C5-4896-8749-F38F021CB395 Q28487957-0867CFA7-F702-48E0-8F63-BF3A99398F9D Q28540198-54D73B08-F0A1-4E77-BB12-61C5B5C6A8B8 Q28563543-CE2D666A-0B9C-4225-AA16-6E43E59C9B8F Q28914729-99366741-5A10-4057-9D91-7189B4867532 Q30008768-B6919FC8-E8D8-46C9-81EC-FDA8914DDB81 Q30009133-C9A74FEC-11FF-4EDA-AE0B-BDEC1F72E9B7 Q30371742-8B7F12AD-B6C8-4C86-8B2B-C0896026CE9A Q30392259-A5B4A540-407D-4BB5-BE05-0F7C711130CC Q30574777-DFB34DBA-128B-4E62-BF2A-C34AC4BA302E Q33356719-8148AD74-2A87-4791-A432-39A577C2EF3E Q33428734-FDECB921-628D-4E71-BB6A-596661FF5BD8 Q33619462-09873BD6-46E7-4F4B-AC6E-2DBC014A664C Q33691498-D0DC2844-98EF-40CC-9EB7-C90F26D0E253 Q33849100-0A9D97E9-0EF8-470C-A7C3-A541E824825A Q33925720-5CDECCF2-2C2B-4B25-810B-20785A7D3363 Q34165943-70C415D6-53AC-4538-AFBB-5E5F081C502E Q34301581-B75DDAB0-5568-4523-A1CE-31CB67183DF7 Q34391526-C1AFCAA0-D5C2-4BC4-A7E1-BAA0CC01D267 Q34446775-ECAEE3C3-F165-4F7B-9FCC-A9CD4C122E2A Q34634178-A9254852-6075-400F-A923-E7D6B552E092 Q34682199-B15F633C-5FC1-4D74-8251-1A089E493232 Q34982735-95039F02-FE1A-4401-8D5E-A31B0928295C Q35082482-3143B28A-1879-4E50-8AF2-EDB730C3DC2F Q35242576-D5DCE292-37D9-4FA5-9420-A69941596B95 Q35739794-F8EE854B-4DAF-445B-A1D4-9F0A58CD02E1 Q35810303-7DE74D7D-9B27-45ED-9C97-D826150A0446 Q35869485-E3A82EDE-686C-4CBE-A632-E706BEAE762B Q35931774-C3CB2A09-7D1D-4C96-BA46-BBCD1BC8C222 Q35973149-8BFE645F-5816-40BE-884A-EDCDDE929AA8 Q36088360-66654272-CDCB-42CD-9EC4-7994737D1A36 Q36099917-969A50B9-A1C8-4368-9737-E91983BEA7BE Q36185797-795E1951-1BEB-4EE9-8B85-A273FD433DBA Q36236508-F8AD02A9-BC50-4615-BD99-F750313CCFE3 Q36624194-5E747BE1-F967-4C32-B8F3-9B9E8B605BAA Q36835372-4D474F31-D903-4EFD-A2F7-E90F56E32590

P2860

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

http://www.wikidata.org/entity/Q35075670

description

2011 nî lūn-bûn

@nan

2011 թուականի Մայիսին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի մայիսին հրատարակված գիտական հոդված

@hy

2011年の論文

@ja

2011年論文

@yue

2011年論文

@zh-hant

2011年論文

@zh-hk

2011年論文

@zh-mo

2011年論文

@zh-tw

2011年论文

@wuu

name

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@ast

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@en

type

label

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@ast

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@en

prefLabel

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@ast

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@en

P1433

Q35075670-A2A1C10D-432D-424D-96B9-572A8800A612

P1476

Q35075670-0CE5D9E8-004E-4217-A266-C59638D9641A

P2093

Q35075670-478D0363-08D6-4F15-9967-9E447118A3ED

Q35075670-676B4B6D-5621-4B18-A559-31202732ED48

Q35075670-6CF6DA72-D21C-4D3B-8B7F-4E13621AFD2D

Q35075670-8667E84C-5455-46CE-8A98-6206DE94CC99

P2860

Q35075670-0EFE989E-5540-4542-AFD5-C638E6C3315E

Q35075670-129776F6-7F6C-4D12-834B-3F0DF456AB93

Q35075670-2B556680-0204-4E1D-93F1-02283311471A

Q35075670-2F7E4EBD-A4E8-4276-A482-D2D1D2DCA336

Q35075670-31ED7720-E97B-4534-A0AE-C0A343B6BDAA

Q35075670-33F97F86-0ECD-4491-A7EC-CC96741E1DFE

Q35075670-34AD8595-F3E7-470A-BE76-90D934A1F4EB

Q35075670-34FFD014-1261-495C-81B0-20CD92648BD5

Q35075670-3A0E7C46-3EA9-4F0D-A0BD-F9688C9C9290

Q35075670-40701CC2-6824-41FE-B114-0C3354F4BF9D

P304

Q35075670-DC3DD026-50E4-46E4-ACC2-CE3EEB4F536C

P31

Q35075670-7C16947B-AF23-48FD-9B76-992FF887FD60

P356

Q35075670-43290729-8ECB-4E4B-9929-7DBBB78890F4

P407

Q35075670-A4F5E818-DB97-4E29-B124-DA1197D3D259

P433

Q35075670-747E88B9-0167-4C3F-8D83-71C95A5E8D01

P478

Q35075670-E16C5A5D-B81E-4333-9D14-1288A3C5EF96

P50

Q35075670-35C3C92A-1700-44FE-A0DA-34B6275160CF

P577

Q35075670-F2FAD329-2930-4EBC-B99F-DDED8340A0FA

P5875

Q35075670-5BA6E0F2-37DF-4A99-9B1C-04F87A24AE3A

P698

Q35075670-43511F78-B527-49AF-95C2-DCC2772B0A2B

P932

Q35075670-B9149607-B34A-45B2-A45C-D46028E0E943

P356

P1433

Nucleic Acids Research

P1476

Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

@en

P2093

Barak Raveh

http://www.w3.org/2001/XMLSchema#string

Eyal Cohen

http://www.w3.org/2001/XMLSchema#string

Guy Fathi

http://www.w3.org/2001/XMLSchema#string

Nir London

http://www.w3.org/2001/XMLSchema#string

P2860

The Protein Data Bank

The RosettaDock server for local protein-protein docking

PatchDock and SymmDock: servers for rigid and symmetric docking.

MEDock: a web server for efficient prediction of ligand binding sites based on a novel optimization algorithm

Systematic discovery of new recognition peptides mediating protein interaction networks

Autophosphorylation Activates Dictyostelium Myosin II Heavy Chain Kinase A by Providing a Ligand for an Allosteric Binding Site in the -Kinase Domain

CASTp: computed atlas of surface topography of proteins with structural and topographical mapping of functionally annotated residues

Effective energy function for proteins in solution

Assembly of cell regulatory systems through protein interaction domains

Automated docking screens: a feasibility study

P304

W249-53

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1093/NAR/GKR431

http://www.w3.org/2001/XMLSchema#string

P407

P433

Web Server issue

http://www.w3.org/2001/XMLSchema#string

P478

39

http://www.w3.org/2001/XMLSchema#string

P50

Ora Schueler-Furman

P577

2011-05-27T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

51175115

http://www.w3.org/2001/XMLSchema#string

P698

21622962

http://www.w3.org/2001/XMLSchema#string

P932

3125795

http://www.w3.org/2001/XMLSchema#string