Predicting helical coaxial stacking in RNA multibranch loops
about
Turning limited experimental information into 3D models of RNAThe structural stabilization of the three-way junction by Mg(II) represents the first step in the folding of a group II intronRNA secondary structure analysis using RNAstructureDetermining RNA three-dimensional structures using low-resolution data.RNA STRAND: the RNA secondary structure and statistical analysis database.Improved free energy parameters for RNA pseudoknotted secondary structure prediction.Hierarchy of RNA functional dynamics.A two-length-scale polymer theory for RNA loop free energies and helix stacking.Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds.Topological constraints are major determinants of tRNA tertiary structure and dynamics and provide basis for tertiary folding cooperativity.Simultaneous prediction of RNA secondary structure and helix coaxial stacking.Promoting RNA helical stacking via A-minor junctions.Noncanonical secondary structure stabilizes mitochondrial tRNA(Ser(UCN)) by reducing the entropic cost of tertiary folding.Predicting coaxial helical stacking in RNA junctions.Structural effects of linkage disequilibrium on the transcriptome.Automated RNA tertiary structure prediction from secondary structure and low-resolution restraints.Mutations Designed by Ensemble Defect to Misfold Conserved RNA Structures of Influenza A Segments 7 and 8 Affect Splicing and Attenuate Viral Replication in Cell CultureIon-mediated RNA structural collapse: effect of spatial confinement.Secondary structure encodes a cooperative tertiary folding funnel in the Azoarcus ribozyme.RNA folding: conformational statistics, folding kinetics, and ion electrostatics.Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimationThermodynamic stabilities of three-way junction nanomotifs in prohead RNA.Coarse grained models reveal essential contributions of topological constraints to the conformational free energy of RNA bulges.Tertiary motifs revealed in analyses of higher-order RNA junctions.A folding algorithm for extended RNA secondary structures.Fluorescence competition and optical melting measurements of RNA three-way multibranch loops provide a revised model for thermodynamic parameters.From knotted to nested RNA structures: a variety of computational methods for pseudoknot removal.The NMR structure of the II-III-VI three-way junction from the Neurospora VS ribozyme reveals a critical tertiary interaction and provides new insights into the global ribozyme structure.Analysis of four-way junctions in RNA structures.Physics-based de novo prediction of RNA 3D structures.Statistical mechanical modeling of RNA folding: from free energy landscape to tertiary structural prediction.The cap-binding translation initiation factor, eIF4E, binds a pseudoknot in a viral cap-independent translation element.Exact calculation of loop formation probability identifies folding motifs in RNA secondary structures.Quantitative tests of a reconstitution model for RNA folding thermodynamics and kinetics.Ribozymes: How RNA catalyzes cyclization.bpRNA: large-scale automated annotation and analysis of RNA secondary structure.
P2860
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P2860
Predicting helical coaxial stacking in RNA multibranch loops
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Predicting helical coaxial stacking in RNA multibranch loops
@ast
Predicting helical coaxial stacking in RNA multibranch loops
@en
type
label
Predicting helical coaxial stacking in RNA multibranch loops
@ast
Predicting helical coaxial stacking in RNA multibranch loops
@en
prefLabel
Predicting helical coaxial stacking in RNA multibranch loops
@ast
Predicting helical coaxial stacking in RNA multibranch loops
@en
P2860
P356
P1433
P1476
Predicting helical coaxial stacking in RNA multibranch loops
@en
P2093
David H Mathews
P2860
P304
P356
10.1261/RNA.305307
P407
P50
P577
2007-05-16T00:00:00Z