Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae.
about
Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitchChemical basis of glycine riboswitch cooperativityUnderstanding nucleic acid-ion interactionsThe roles of metal ions in regulation by riboswitchesSolution structure of tRNAVal from refinement of homology model against residual dipolar coupling and SAXS dataStructural Insights into Ligand Recognition by a Sensing Domain of the Cooperative Glycine RiboswitchInsights into Metalloregulation by M-box Riboswitch RNAs via Structural Analysis of Manganese-Bound ComplexesStructural Basis of Cooperative Ligand Binding by the Glycine RiboswitchComparison of a PreQ1 Riboswitch Aptamer in Metabolite-bound and Free States with Implications for Gene RegulationMetabolite recognition principles and molecular mechanisms underlying riboswitch functionEvolutionary evidence for alternative structure in RNA sequence co-variationConventions and workflows for using SitusAn energetically beneficial leader-linker interaction abolishes ligand-binding cooperativity in glycine riboswitchesCharacterizing RNA ensembles from NMR data with kinematic models.Influence of DNA structure on adjacent site cooperative binding.Improving small-angle X-ray scattering data for structural analyses of the RNA worldUsing Situs for the integration of multi-resolution structures.Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis.Rapid kinetics of iron responsive element (IRE) RNA/iron regulatory protein 1 and IRE-RNA/eIF4F complexes respond differently to metal ions.Hierarchy of RNA functional dynamics.Analysis of riboswitch structure and ligand binding using small-angle X-ray scattering (SAXS)Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding.Characterizing the dynamics of the leader-linker interaction in the glycine riboswitch with site-directed spin labelingExtended structures in RNA folding intermediates are due to nonnative interactions rather than electrostatic repulsion.Amino acid recognition and gene regulation by riboswitches.Engineering and characterization of fluorogenic glycine riboswitches.Conformational dynamics of bacteriophage T7 DNA polymerase and its processivity factor, Escherichia coli thioredoxinViral RNAs are unusually compactThe ligand-free state of the TPP riboswitch: a partially folded RNA structure.A two-dimensional mutate-and-map strategy for non-coding RNA structure.Evaluating our ability to predict the structural disruption of RNA by SNPs.Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancyDNA-rescuable allosteric inhibition of aptamer II ligand affinity by aptamer I element in the shortened Vibrio cholerae glycine riboswitch.Applications of synchrotron-based spectroscopic techniques in studying nucleic acids and nucleic acid-functionalized nanomaterialsThe structural and functional diversity of metabolite-binding riboswitchesRiboswitches: discovery of drugs that target bacterial gene-regulatory RNAs.Riboswitch conformations revealed by small-angle X-ray scattering.Visualizing large RNA molecules in solution.The intricate world of riboswitchesMultiple conformations of SAM-II riboswitch detected with SAXS and NMR spectroscopy.
P2860
Q24629812-0BCE2E23-FF46-476C-AA5F-E74F2A67B1D9Q24685035-04FE4EC5-775D-4884-A1CA-86B46C7A61EFQ26822427-1CB982C2-0B0F-460D-B8A0-14EFB7C7C288Q26860290-4994CD64-A26B-4CD4-9637-B87A2485DCFAQ27652122-E3193B5B-57FA-4B35-B253-4C4C5034E626Q27666293-2E2CD7D0-8EF5-4424-A065-8D5042E664B9Q27666944-5867D75A-1012-4DE1-A898-7E115DA5865FQ27667323-310E6303-BC74-4569-B4A5-800D9CD91304Q27667887-43593167-5D37-4CB5-A9C7-4FC4DC11654CQ28109611-E69C2040-A641-44D3-9AB2-F3966159D8F1Q28534841-8C99D12B-7551-4CC8-AE0D-796691A717E4Q28730688-AC77C774-B25F-4E05-8647-431809BFC57AQ28731792-28DA66D2-C66D-464A-B2F1-69E614BFE6BCQ30842127-C314641D-CDAA-4AAB-AA8C-447A6FE04AFBQ33346933-E04BFEDF-27E5-482F-AB4B-04E1CA2036E4Q33526946-3FA675BA-1151-4693-9118-03240CCBD3A5Q33651334-71E08791-814F-4934-B916-D9F54D68B735Q33658493-E25E97B2-3B0A-44A6-BA7C-CD6C48665BCAQ33698494-9C3B87AB-76B0-4FED-9A61-E7C3DDE682DFQ33723134-EEA6A011-BD6E-484D-B963-A45198B0278BQ33725063-020AAC19-4469-438B-8DFC-07FD07DFB8A7Q33749946-35A5B983-4970-4A88-85B2-251030D34114Q33762896-573F444B-77F3-45C0-9DC8-32D5B954F2D9Q33862835-EBBEFAAD-5A92-4694-8FA8-ABF3DED1D710Q34018578-CC55E574-0AC6-4B85-BD3A-7FE1892F8595Q34046871-5C2869AB-EAC5-4A1A-BA2F-F9C3D4505656Q34093691-4935EC7C-8486-4273-B84F-8E857334F602Q34134627-F1FB4BA7-6E51-4CCA-9107-95E32C880566Q34151962-A848F1D6-F333-4827-8E42-5D087050A61BQ34235299-0EDB6DFA-1725-4B97-A533-4A204A0C1DE6Q34324956-610319D9-700A-4A50-9CED-7E000D93D253Q34363910-A78CF371-AD32-46DC-804E-E0F980C8AAC4Q34575007-E3D0CA6C-681C-471D-B372-22B518E37AA9Q34766893-8AD2E0BB-F9BB-4DE9-94FC-40D9AC6D58CCQ34965135-564C4B1E-E486-44C1-B2F9-826D8DF9FF98Q35350419-BE6FC6A2-57B1-48D7-B8BA-6BE578020771Q35364202-F3F4CAE5-8B9A-499D-8C44-C7B48345CD1CQ35691193-F47CC6D3-3CCE-4E3B-974C-B43D7D8FB3F6Q35847087-2D154ED3-4A2C-4ED2-9A11-26F1DB358326Q35888815-EF858F9B-49FB-418E-A397-11AD8C24C9FD
P2860
Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
2006年论文
@zh
2006年论文
@zh-cn
name
Structural transitions and the ...... boswitch from Vibrio cholerae.
@ast
Structural transitions and the ...... boswitch from Vibrio cholerae.
@en
type
label
Structural transitions and the ...... boswitch from Vibrio cholerae.
@ast
Structural transitions and the ...... boswitch from Vibrio cholerae.
@en
prefLabel
Structural transitions and the ...... boswitch from Vibrio cholerae.
@ast
Structural transitions and the ...... boswitch from Vibrio cholerae.
@en
P2093
P2860
P50
P1476
Structural transitions and the ...... boswitch from Vibrio cholerae.
@en
P2093
Daniel Herschlag
Madhuri Kudaravalli
Nathan Boyd
Vincent B Chu
P2860
P304
P356
10.1016/J.JMB.2006.10.022
P407
P577
2006-10-13T00:00:00Z