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Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene treesInferring Orthologs: Open Questions and PerspectivesImpact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classificationWidespread Inter- and Intra-Domain Horizontal Gene Transfer of d-Amino Acid Metabolism Enzymes in EukaryotesTerrestrial mountain islands and Pleistocene climate fluctuations as motors for speciation: A case study on the genus Pseudovelia (Hemiptera: Veliidae)Selecting informative subsets of sparse supermatrices increases the chance to find correct treesLateral gene transfer from the deadPhylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciationsHow stands the Tree of Life a century and a half after The Origin?Combined phylogenetic and genomic approaches for the high-throughput study of microbial habitat adaptationSave the tree of life or get lost in the woodsPhylogenomics with incomplete taxon coverage: the limits to inferenceThe practice of classification and the theory of evolution, and what the demise of Charles Darwin's tree of life hypothesis means for both of themIntroduction. Statistical and computational challenges in molecular phylogenetics and evolutionOf woods and webs: possible alternatives to the tree of life for studying genomic fluidity in E. coliFine-scale phylogenetic discordance across the house mouse genome.Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life.Search for a 'Tree of Life' in the thicket of the phylogenetic forest.The phylogenetic forest and the quest for the elusive tree of life.The fundamental units, processes and patterns of evolution, and the tree of life conundrum.Phylogenomic analysis of marine Roseobacters.An intuitive, informative, and most balanced representation of phylogenetic topologies.Testing for divergent transmission histories among cultural characters: a study using Bayesian phylogenetic methods and Iranian tribal textile data.Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae).Split-based computation of majority-rule supertrees.Overview of the transcriptome profiles identified in hagfish, shark, and bichir: current issues arising from some nonmodel vertebrate taxa.Random Addition Concatenation Analysis: a novel approach to the exploration of phylogenomic signal reveals strong agreement between core and shell genomic partitions in the cyanobacteriaSupertrees Based on the Subtree Prune-and-Regraft Distance.Phage cluster relationships identified through single gene analysis.In silico scrutiny of genes revealing phylogenetic congruence with clinical prevalence or tropism properties of Chlamydia trachomatis strains.Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes.Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.A glacial survivor of the alpine Mediterranean region: phylogenetic and phylogeographic insights into Silene ciliata Pourr. (Caryophyllaceae).Practically delineating bacterial species with genealogical concordance.Evolutionary Genomics of Salmonella enterica Subspecies.Trees in the web of life.Prokaryotic evolution and the tree of life are two different things.Ordered orthology as a tool in prokaryotic evolutionary inference.Darwin's goldmine is still open: variation and selection run the world.Causes, consequences and solutions of phylogenetic incongruence.
P2860
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P2860
description
article científic
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article scientifique
@fr
articolo scientifico
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artigo científico
@pt
bilimsel makale
@tr
scientific article published on December 2008
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
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vědecký článek
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name
Dealing with incongruence in phylogenomic analyses.
@en
Dealing with incongruence in phylogenomic analyses.
@nl
type
label
Dealing with incongruence in phylogenomic analyses.
@en
Dealing with incongruence in phylogenomic analyses.
@nl
prefLabel
Dealing with incongruence in phylogenomic analyses.
@en
Dealing with incongruence in phylogenomic analyses.
@nl
P2860
P356
P1476
Dealing with incongruence in phylogenomic analyses.
@en
P2093
Nicolas Galtier
P2860
P304
P356
10.1098/RSTB.2008.0144
P407
P577
2008-12-01T00:00:00Z