RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
about
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein familiesPhyloScan: identification of transcription factor binding sites using cross-species evidenceThe genome sequence of Geobacter metallireducens: features of metabolism, physiology and regulation common and dissimilar to Geobacter sulfurreducensExtraTrain: a database of Extragenic regions and Transcriptional information in prokaryotic organismsEscherichia coli K-12: a cooperatively developed annotation snapshot--2005DBD: a transcription factor prediction database.Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulationAn extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifsSTRING: known and predicted protein-protein associations, integrated and transferred across organismsTranscriptional interference--a crash courseIdentification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomicsNebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons.EcoCyc: a comprehensive database resource for Escherichia coliGANN: genetic algorithm neural networks for the detection of conserved combinations of features in DNAHierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approachGene fusions and gene duplications: relevance to genomic annotation and functional analysisGenomic transcriptional response to loss of chromosomal supercoiling in Escherichia coliProtein-DNA binding specificity predictions with structural modelsLimitations and potentials of current motif discovery algorithms.The activity reaction core and plasticity of metabolic networksPhydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis.Phylogenetic detection of conserved gene clusters in microbial genomes.RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditionsThe comprehensive updated regulatory network of Escherichia coli K-12.ODB: a database of operons accumulating known operons across multiple genomes.Prokaryotic genome regulation: a revolutionary paradigmMinimum information requested in the annotation of biochemical models (MIRIAM)Matrix formalism to describe functional states of transcriptional regulatory systems.MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequencesDefining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria.Operon information improves gene expression estimation for cDNA microarrays.Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data.A classification based framework for quantitative description of large-scale microarray data.More robust detection of motifs in coexpressed genes by using phylogenetic information.Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress.EMD: an ensemble algorithm for discovering regulatory motifs in DNA sequencesCoding limits on the number of transcription factorsVariable coordination of cotranscribed genes in Escherichia coli following antisense repressionThe correlation between architecture and mRNA abundance in the genetic regulatory network of Escherichia coliSelection against spurious promoter motifs correlates with translational efficiency across bacteria
P2860
Q21089567-C57ACB38-13C1-4635-9F45-C3AD26CBE9E1Q21203111-9BBA0ABA-9EE4-4536-ADA5-15143FE6F28AQ21263054-BCCAE170-4E34-4444-8BCB-A2792D7CDC05Q21263079-5952E303-F913-4607-8D2D-DCF7640B21D2Q22065980-C3420C5D-7E73-4DF7-B63F-1749FB77F45DQ24538686-7FF750C8-3F74-441C-A2E2-E85C33891777Q24546080-0DB360B4-840A-4135-B29C-9EF8A6D866D8Q24557485-DB9A6A2A-E31B-422F-B0DA-3338B80009B9Q24558597-A8450498-ADF3-46E5-BB9C-BD9F8522A9E4Q24606100-FC0561F0-D1B0-450F-8809-BCDC60641C54Q24653390-D3799F59-ACA9-4B21-A5EC-1C6CC1D81D7FQ24796432-8F296248-D6A6-4F3A-AEA7-DEE20A6E89DDQ24796847-3DDE4039-ED32-46FA-935A-0D6EF3C56C18Q24799167-B342E340-C72C-4C2D-913F-9A0B604195C7Q24804022-8FA7610C-9F6D-4A6E-A441-C3BC2E006789Q24806190-D0B00CD8-1114-40D2-90C7-AFF65928E907Q24809586-BB644350-8872-476B-88E7-91DE2E0DE2EDQ24811023-E8EF6E05-F388-4344-A7B0-3C7FD0AF7F7DQ24811129-84E00389-4B32-4F22-8406-020160E56309Q24811413-296819E6-A869-45A6-8127-A89172545888Q24815778-9ECF7B4E-7534-4E14-8D76-0614300F5D86Q24816387-C4F1E412-FA19-4C8F-875D-5B4E894A461CQ25257226-8158E10A-70FF-429E-AB1E-094A3A43D25AQ25257513-95277977-37DB-4DC7-A33D-DE028C5B0BFAQ25257797-19ED0B92-47DB-4C22-909F-07573117E975Q26851625-D3DC0A4F-9254-4825-A363-1E7955544FAFQ28285448-885CB90B-4DF2-4201-9A54-86CFCB3EDA71Q28469032-59423FFE-CC66-48D2-9A1E-E54010AE7E55Q28710347-5C25EC74-6C33-43E0-A77F-0A9B4405B598Q29346719-3373FD7C-139E-4E82-BBFE-CB6E8AF2F307Q30477624-040D46CE-ECB9-447F-BAB6-46096A05886BQ30763665-DFED3AD3-8361-4C1F-93A7-BE45B81A4220Q31037143-E5A6FFFC-6D5C-4AB6-A0E0-4091E1F001DCQ33237075-17705DDB-510C-4744-BC18-553860373814Q33242489-31D46E8D-0BE2-40B2-AC7B-AF9A1B807D44Q33250099-A8C0DAF4-C477-4352-9FEA-C6D465C60EBDQ33258039-A3CE9F3B-1632-4125-9405-7E86D5686896Q33264227-1AF25C97-7CDF-48E0-A600-7E671B2D5DC0Q33291225-E7FF3889-0407-4B06-A04C-3B4F637FBFEEQ33294718-87BE5F7F-210A-4459-BC81-D0F73E22B497
P2860
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
RegulonDB (version 4.0): trans ...... tions in Escherichia coli K-12
@en
type
label
RegulonDB (version 4.0): trans ...... tions in Escherichia coli K-12
@en
prefLabel
RegulonDB (version 4.0): trans ...... tions in Escherichia coli K-12
@en
P2093
P2860
P356
P1476
RegulonDB (version 4.0): trans ...... tions in Escherichia coli K-12
@en
P2093
Agustino Martínez-Antonio
Alberto Santos-Zavaleta
César Bonavides-Martínez
Delfino Garcia-Alonso
Edgar Díaz-Peredo
Fabiola Sánchez-Solano
Heladia Salgado
Julio Collado-Vides
Martín Peralta-Gil
Socorro Gama-Castro
P2860
P304
P356
10.1093/NAR/GKH140
P433
Database issue
P577
2004-01-01T00:00:00Z