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H++: a server for estimating pKas and adding missing hydrogens to macromoleculesPPD v1.0--an integrated, web-accessible database of experimentally determined protein pKa valuesProteins as strongly correlated protonic systemsConserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pairA proton-NMR investigation of the fully reduced cytochrome c7 from Desulfuromonas acetoxidans. Comparison between the reduced and the oxidized formsThe ionization of a buried glutamic acid is thermodynamically linked to the stability of Leishmania mexicana triose phosphate isomeraseStructural basis for altered activity of M- and H-isozyme forms of human lactate dehydrogenaseElectrostatic properties of the structure of the docking and dimerization domain of protein kinase A IIalphaHigh Apparent Dielectric Constant Inside a Protein Reflects Structural Reorganization Coupled to the Ionization of an Internal AspRedox-Bohr and other cooperativity effects in the nine-heme cytochrome C from Desulfovibrio desulfuricans ATCC 27774: crystallographic and modeling studiesA buried lysine that titrates with a normal pKa: Role of conformational flexibility at the protein-water interface as a determinant of pKavaluesThe Solution Structure of DNA-free Pax-8 Paired Box Domain Accounts for Redox Regulation of Transcriptional Activity in the Pax Protein FamilyThe pKa Values of Acidic and Basic Residues Buried at the Same Internal Location in a Protein Are Governed by Different FactorsStructural and thermodynamic consequences of burial of an artificial ion pair in the hydrophobic interior of a proteinIn crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0Native-state conformational dynamics of GART: a regulatory pH-dependent coil-helix transition examined by electrostatic calculationsProton transfer dynamics of GART: the pH-dependent catalytic mechanism examined by electrostatic calculationsHierarchical approach to predicting permeation in ion channelsInfluence of a lipid interface on protein dynamics in a fungal lipase.The effect of net charge on the solubility, activity, and stability of ribonuclease SapH-Dependent conformational changes in proteins and their effect on experimental pK(a)s: the case of Nitrophorin 4pH replica-exchange method based on discrete protonation statesElectrostatic calculations of amino acid titration and electron transfer, Q-AQB-->QAQ-B, in the reaction centerNMR dynamic studies suggest that allosteric activation regulates ligand binding in chicken liver bile acid-binding protein.Improvement of side-chain modeling in proteins with the self-consistent mean field theory method based on an analysis of the factors influencing prediction.Empirical relationships between protein structure and carboxyl pKa values in proteins.Proton binding to proteins: a free-energy component analysis using a dielectric continuum model.Protein dielectric constants determined from NMR chemical shift perturbationsFactors influencing the energetics of electron and proton transfers in proteins. What can be learned from calculations.pKa of residue 66 in Staphylococal nuclease. I. Insights from QM/MM simulations with conventional sampling.Dielectric relaxation of cytochrome c oxidase: Comparison of the microscopic and continuum models.Microscopic basis for kinetic gating in Cytochrome c oxidase: insights from QM/MM analysis.Remeasuring HEWL pK(a) values by NMR spectroscopy: methods, analysis, accuracy, and implications for theoretical pK(a) calculations.Calculation of electrostatic effects at the amino terminus of an alpha helix.Electrostatics of cysteine residues in proteins: parameterization and validation of a simple model.Incorporating protein conformational flexibility into the calculation of pH-dependent protein properties.Thermodynamic linkage between the binding of protons and inhibitors to HIV-1 protease.Association of aminoglycosidic antibiotics with the ribosomal A-site studied with Brownian dynamicsPHEMTO: protein pH-dependent electric moment tools.On the Dielectric "Constant" of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi
P2860
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P2860
description
1994 nî lūn-bûn
@nan
1994年の論文
@ja
1994年論文
@yue
1994年論文
@zh-hant
1994年論文
@zh-hk
1994年論文
@zh-mo
1994年論文
@zh-tw
1994年论文
@wuu
1994年论文
@zh
1994年论文
@zh-cn
name
Prediction of pH-dependent properties of proteins.
@en
type
label
Prediction of pH-dependent properties of proteins.
@en
prefLabel
Prediction of pH-dependent properties of proteins.
@en
P2093
P356
P1476
Prediction of pH-dependent properties of proteins.
@en
P2093
Antosiewicz J
McCammon JA
P304
P356
10.1006/JMBI.1994.1301
P407
P577
1994-05-01T00:00:00Z