Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions - Wikidata - awgldk - TriplyDB

Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

http://www.wikidata.org/entity/Q41374953

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Stable isotope-resolved metabolomics and applications for drug development CeCaFDB: a curated database for the documentation, visualization and comparative analysis of central carbon metabolic flux distributions explored by 13C-fluxomics Achieving Metabolic Flux Analysis for S. cerevisiae at a Genome-Scale: Challenges, Requirements, and Considerations Computational approaches for understanding energy metabolism Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation Quantification of Microbial Phenotypes Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0 Comparative evaluation of open source software for mapping between metabolite identifiers in metabolic network reconstructions: application to Recon 2 A peptide-based method for 13C Metabolic Flux Analysis in microbial communities Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks Metabolomic and (13)C-metabolic flux analysis of a xylose-consuming Saccharomyces cerevisiae strain expressing xylose isomerase Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming Reductive glutamine metabolism by IDH1 mediates lipogenesis under hypoxia Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways Fragment formula calculator (FFC): determination of chemical formulas for fragment ions in mass spectrometric data.Efficient Modeling of MS/MS Data for Metabolic Flux Analysis A Method to Constrain Genome-Scale Models with 13C Labeling Data.Comprehensive metabolic modeling of multiple 13C-isotopomer data sets to study metabolism in perfused working hearts.Estimation of flux ratios without uptake or release data: Application to serine and methionine metabolism.The topology of metabolic isotope labeling networks.13C labeling experiments at metabolic nonstationary conditions: an exploratory study.Hybrid optimization for 13C metabolic flux analysis using systems parametrized by compactification.An analytic and systematic framework for estimating metabolic flux ratios from 13C tracer experiments Genome-scale models of bacterial metabolism: reconstruction and applications.ER calcium release promotes mitochondrial dysfunction and hepatic cell lipotoxicity in response to palmitate overload.Fluxomers: a new approach for 13C metabolic flux analysis Metabolic flux pattern of glucose utilization by Xanthomonas campestris pv. campestris: prevalent role of the Entner-Doudoroff pathway and minor fluxes through the pentose phosphate pathway and glycolysis.Predicting outcomes of steady-state ¹³C isotope tracing experiments using Monte Carlo sampling.Dynamic regulatory on/off minimization for biological systems under internal temporal perturbations.Metabolic modeling of dynamic brain ¹³C NMR multiplet data: concepts and simulations with a two-compartment neuronal-glial model Rational design of ¹³C-labeling experiments for metabolic flux analysis in mammalian cells Fluxomics: mass spectrometry versus quantitative imaging.Recent advances in mapping environmental microbial metabolisms through 13C isotopic fingerprints.The pyruvate-tricarboxylic acid cycle node: a focal point of virulence control in the enteric pathogen Yersinia pseudotuberculosis.13CFLUX2--high-performance software suite for (13)C-metabolic flux analysis.Evaluation of 13C isotopic tracers for metabolic flux analysis in mammalian cells.Systems biology: the next frontier for bioinformatics.OpenFLUX2: (13)C-MFA modeling software package adjusted for the comprehensive analysis of single and parallel labeling experiments Pyruvate kinase isoform expression alters nucleotide synthesis to impact cell proliferation

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P2860

Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

http://www.wikidata.org/entity/Q41374953

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Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

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Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

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J.YMBEN.2006.09.001

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Metabolic Engineering

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Elementary metabolite units (EMU): a novel framework for modeling isotopic distributions

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Gregory Stephanopoulos

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Joanne K Kelleher

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P2860

Cumulative bondomers: a new concept in flux analysis from 2D [13C,1H] COSY NMR data.

Metabolic fluxes and metabolic engineering.

13C metabolic flux analysis.

In vivo measurement of fluxes through metabolic pathways: the missing link in functional genomics and pharmaceutical research.

Applications of mass isotopomer analysis to nutrition research.

Modeling isotopomer distributions in biochemical networks using isotopomer mapping matrices.

Determination of confidence intervals of metabolic fluxes estimated from stable isotope measurements.

Bidirectional reaction steps in metabolic networks: II. Flux estimation and statistical analysis.

Metabolic isotopomer labeling systems. Part I: global dynamic behavior.

Bidirectional reaction steps in metabolic networks: III. Explicit solution and analysis of isotopomer labeling systems.

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68-86

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scholarly article

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10.1016/J.YMBEN.2006.09.001

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1

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9

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Maciek R Antoniewicz

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6709224

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1994654

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