Evaluation of algorithm performance in ChIP-seq peak detection
about
Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq dataThe birth of the Epitranscriptome: deciphering the function of RNA modificationsPractical guidelines for the comprehensive analysis of ChIP-seq dataAnalysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic CellsOverview of high throughput sequencing technologies to elucidate molecular pathways in cardiovascular diseasesIntegrating Epigenomics into the Understanding of Biomedical InsightEvidence for a common evolutionary rate in metazoan transcriptional networksEWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functionsHigh resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technologyDetecting and correcting the binding-affinity bias in ChIP-seq data using inter-species information.Features that define the best ChIP-seq peak calling algorithmsCombinatorial epigenetic patterns as quantitative predictors of chromatin biology.JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profilesWaveSeq: a novel data-driven method of detecting histone modification enrichments using wavelets.A co-localization model of paired ChIP-seq data using a large ENCODE data set enables comparison of multiple samples.MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing dataChIP-PED enhances the analysis of ChIP-seq and ChIP-chip dataExome-based analysis for RNA epigenome sequencing data.NEXT-peak: a normal-exponential two-peak model for peak-calling in ChIP-seq data.Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data.Uniform, optimal signal processing of mapped deep-sequencing data.LOcating non-unique matched tags (LONUT) to improve the detection of the enriched regions for ChIP-seq dataIdentification of transcription factor binding sites from ChIP-seq data at high resolution.dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq dataHypergeometric analysis of tiling-array and sequence data: detection and interpretation of peaks.MMDiff: quantitative testing for shape changes in ChIP-Seq data setsAssessing computational methods for transcription factor target gene identification based on ChIP-seq data.T-KDE: a method for genome-wide identification of constitutive protein binding sites from multiple ChIP-seq data setsAdaptive bandwidth kernel density estimation for next-generation sequencing data.Navigating and mining modENCODE data.Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data.Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering.Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentA protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data.Saturation analysis of ChIP-seq data for reproducible identification of binding peaks.A new approach for the joint analysis of multiple ChIP-seq libraries with application to histone modificationA novel approach for transcription factor analysis using SELEX with high-throughput sequencing (TFAST).Identifying peaks in *-seq data using shape information.
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P2860
Evaluation of algorithm performance in ChIP-seq peak detection
description
2010 nî lūn-bûn
@nan
2010 թուականին հրատարակուած գիտական յօդուած
@hyw
2010 թվականին հրատարակված գիտական հոդված
@hy
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
name
Evaluation of algorithm performance in ChIP-seq peak detection
@ast
Evaluation of algorithm performance in ChIP-seq peak detection
@en
Evaluation of algorithm performance in ChIP-seq peak detection
@en-gb
Evaluation of algorithm performance in ChIP-seq peak detection
@nl
type
label
Evaluation of algorithm performance in ChIP-seq peak detection
@ast
Evaluation of algorithm performance in ChIP-seq peak detection
@en
Evaluation of algorithm performance in ChIP-seq peak detection
@en-gb
Evaluation of algorithm performance in ChIP-seq peak detection
@nl
altLabel
Evaluation of Algorithm Performance in ChIP-Seq Peak Detection
@en
prefLabel
Evaluation of algorithm performance in ChIP-seq peak detection
@ast
Evaluation of algorithm performance in ChIP-seq peak detection
@en
Evaluation of algorithm performance in ChIP-seq peak detection
@en-gb
Evaluation of algorithm performance in ChIP-seq peak detection
@nl
P2860
P3181
P1433
P1476
Evaluation of algorithm performance in ChIP-seq peak detection
@en
P2093
Elizabeth G Wilbanks
Marc T Facciotti
P2860
P304
P3181
P356
10.1371/JOURNAL.PONE.0011471
P407
P577
2010-01-01T00:00:00Z