The GENCODE pseudogene resource - Test2 - elhamkhani - TriplyDB

The GENCODE pseudogene resource

The GENCODE pseudogene resource

http://www.wikidata.org/entity/Q21183996

about

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions The case for junk DNA On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE Integrated analysis of dysregulated ncRNA and mRNA expression profiles in humans exposed to carbon nanotubes GENCODE: the reference human genome annotation for The ENCODE Project Expression of evolutionarily novel genes in tumors Volatile evolution of long noncoding RNA repertoires: mechanisms and biological implications An expanding universe of the non-coding genome in cancer biology A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project Evolutionary conservation of long non-coding RNAs; sequence, structure, function Epigenetics, chromatin and genome organization: recent advances from the ENCODE project Identification of minimal eukaryotic introns through GeneBase, a user-friendly tool for parsing the NCBI Gene databank Pseudogenes and Their Genome-Wide Prediction in Plants Allosteric activation of trypanosomatid deoxyhypusine synthase by a catalytically dead paralog Filtering for compound heterozygous sequence variants in non-consanguineous pedigrees Biochemistry and physiology within the framework of the extended synthesis of evolutionary biology Global Intersection of Long Non-Coding RNAs with Processed and Unprocessed Pseudogenes in the Human Genome Genome-wide linkage analyses of non-Hispanic white families identify novel loci for familial late-onset Alzheimer's disease.Potential Mechanisms for Cancer Resistance in Elephants and Comparative Cellular Response to DNA Damage in Humans VEGFR-1 Pseudogene Expression and Regulatory Function in Human Colorectal Cancer Cells Comparative analysis of pseudogenes across three phyla Not so pseudo anymore: pseudogenes as therapeutic targets Characterization of human pseudogene-derived non-coding RNAs for functional potential Analysis of variable retroduplications in human populations suggests coupling of retrotransposition to cell division Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes Human Transcriptome and Chromatin Modifications: An ENCODE Perspective A tiered hidden Markov model characterizes multi-scale chromatin states A draft map of the human proteome Natural Selection and Functional Potentials of Human Noncoding Elements Revealed by Analysis of Next Generation Sequencing Data Competitive endogenous RNA network: potential implication for systemic lupus erythematosus.Finding the lost treasures in exome sequencing data.Complete Sequence Construction of the Highly Repetitive Ribosomal RNA Gene Repeats in Eukaryotes Using Whole Genome Sequence Data.Protein-Coding Genes' Retrocopies and Their Functions.Genome-wide analysis of histone modifications in human endometrial stromal cells.Applications of the 1000 Genomes Project resources Genome annotation for clinical genomic diagnostics: strengths and weaknesses The Genomic Impact of Gene Retrocopies: What Have We Learned from Comparative Genomics, Population Genomics, and Transcriptomic Analyses?A Computational Methodology to Overcome the Challenges Associated With the Search for Specific Enzyme Targets to Develop Drugs Against Leishmania major.Mechanism by which a LINE protein recognizes its 3' tail RNA.

P2860

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P2860

The GENCODE pseudogene resource

http://www.wikidata.org/entity/Q21183996

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2012 nî lūn-bûn

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The GENCODE pseudogene resource

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The GENCODE pseudogene resource

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The GENCODE pseudogene resource

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The GENCODE pseudogene resource

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Baikang Pei

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Suganthi Balasubramanian

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Xinmeng Jasmine Mu

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P2860

Comparative genomics search for losses of long-established genes on the human lineage

Genome-wide survey for biologically functional pseudogenes

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes

Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates

GENCODE: producing a reference annotation for ENCODE

Retrocopy contributions to the evolution of the human genome

Pseudogenes: Are They “Junk” or Functional DNA?

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

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