about
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot projectComparative analysis of processed ribosomal protein pseudogenes in four mammalian genomesThe GENCODE pseudogene resourceIdentification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primatesGENCODE: producing a reference annotation for ENCODEPolymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequenceEvidence for transcript networks composed of chimeric RNAs in human cellsThe DNA sequence of the human X chromosomeQuantifying the mechanisms of domain gain in animal proteinsPseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolutionGENCODE: the reference human genome annotation for The ENCODE ProjectThe importance of identifying alternative splicing in vertebrate genome annotationTracking and coordinating an international curation effort for the CCDS ProjectThe consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomesProminent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regionsMultiple evidence strands suggest that there may be as few as 19,000 human protein-coding genesComparative analysis of pseudogenes across three phylaGene inactivation and its implications for annotation in the era of personal genomicsThe implications of alternative splicing in the ENCODE protein complementDetermination and validation of principal gene products.Efficient targeted transcript discovery via array-based normalization of RACE libraries.Genome annotation for clinical genomic diagnostics: strengths and weaknessesTranscriptome analysis of human tissues and cell lines reveals one dominant transcript per geneComparative analysis of the transcriptome across distant speciesShotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genomeThe Vertebrate Genome Annotation browser 10 years onThe origins, evolution, and functional potential of alternative splicing in vertebrates.Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment.Comparison of GENCODE and RefSeq gene annotation and the impact of reference geneset on variant effect prediction.Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function.Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome.Functional transcriptomics in the post-ENCODE eraValidation of mRNA/EST-based gene predictions in human Xp11.4 revealed differences to the organization of the orthologous mouse locus.Defining the human reference protein-coding gene set.Consensus coding sequence (CCDS) database: a standardized set of human and mouse protein-coding regions supported by expert curation.GENCODE pseudogenes.High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing.Pseudogenes in the mouse lineage: transcriptional activity and strain-specific historyThe shrinking human protein coding complement: are there fewer than 20,000 genes?RNAcentral: a hub of information for non-coding RNA sequences
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P50
description
hulumtues
@sq
onderzoeker
@nl
researcher
@en
հետազոտող
@hy
name
Adam Frankish
@ast
Adam Frankish
@en
Adam Frankish
@es
Adam Frankish
@nl
Adam Frankish
@sl
type
label
Adam Frankish
@ast
Adam Frankish
@en
Adam Frankish
@es
Adam Frankish
@nl
Adam Frankish
@sl
prefLabel
Adam Frankish
@ast
Adam Frankish
@en
Adam Frankish
@es
Adam Frankish
@nl
Adam Frankish
@sl