Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution - Test2 - elhamkhani - TriplyDB

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

http://www.wikidata.org/entity/Q22065739

about

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Composition and evolution of the vertebrate and mammalian selenoproteomes Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes The GENCODE pseudogene resource Human genetics and genomics a decade after the release of the draft sequence of the human genome De novo origination of a new protein-coding gene in Saccharomyces cerevisiae GENCODE: the reference human genome annotation for The ENCODE Project Pseudogenes: pseudo-functional or key regulators in health and disease?The importance of identifying alternative splicing in vertebrate genome annotation Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions Pseudogenes and Their Genome-Wide Prediction in Plants The Landscape of long noncoding RNA classification MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons Evolution of Genome Size in Asexual Digital Organisms Gene-pseudogene evolution: a probabilistic approach Alternative translation initiation codons for the plastid maturase MatK: unraveling the pseudogene misconception in the Orchidaceae piRNAs derived from ancient viral processed pseudogenes as transgenerational sequence-specific immune memory in mammals Nucleosome Organization around Pseudogenes in the Human Genome Comparative analysis of pseudogenes across three phyla Not so pseudo anymore: pseudogenes as therapeutic targets Characterization of human pseudogene-derived non-coding RNAs for functional potential Not so pseudo: the evolutionary history of protein phosphatase 1 regulatory subunit 2 and related pseudogenes Expressed pseudogenes in the transcriptional landscape of human cancers pseudoMap: an innovative and comprehensive resource for identification of siRNA-mediated mechanisms in human transcribed pseudogenes Transcribed pseudogene ψPPM1K generates endogenous siRNA to suppress oncogenic cell growth in hepatocellular carcinoma The human transcriptome: an unfinished story LINEs, SINEs and other retroelements: do birds of a feather flock together?Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity Endosymbiont DNA in endobacteria-free filarial nematodes indicates ancient horizontal genetic transfer Small RNAs originated from pseudogenes: cis- or trans-acting?Evolutionary insights into the unique electromotility motor of mammalian outer hair cells.Revisiting the missing protein-coding gene catalog of the domestic dog Plant genomes enclose footprints of past infections by giant virus relatives Comparative validation of the D. melanogaster modENCODE transcriptome annotation.Genome-wide gene expression analysis implicates the immune response and lymphangiogenesis in the pathogenesis of fetal chylothorax Identification and characterization of pseudogenes in the rice gene complement.Manual annotation and analysis of the defensin gene cluster in the C57BL/6J mouse reference genome.Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis.Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays.Pseudogenes as an alternative source of natural antisense transcripts.

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P2860

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

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2007 nî lūn-bûn

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2007 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2007年の論文

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Genome Research

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Pseudogenes in the ENCODE regi ...... f transcription, and evolution

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Chia-Lin Wei

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Michael Snyder

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Siew Woh Choo

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Yijun Ruan

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Yontao Lu

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P2860

Initial sequencing and analysis of the human genome

GeneWise and Genomewise

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Emergence of young human genes after a burst of retroposition in primates

Genome-wide survey for biologically functional pseudogenes

GENCODE: producing a reference annotation for ENCODE

EGASP: the human ENCODE Genome Annotation Assessment Project

Pseudogenes: Are They “Junk” or Functional DNA?

Molecular fossils in the human genome: identification and analysis of the pseudogenes in chromosomes 21 and 22

The origin of new genes: glimpses from the young and old

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10.1101/GR.5586307

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6

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17

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Stylianos Antonarakis

Roderic Guigó i Serra

Alexandre Reymond

Philipp Kapranov

Jennifer Harrow

Robert Baertsch

Thomas R. Gingeras

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2007-06-01T00:00:00Z

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6269159

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1891343

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