Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins - Test2 - elhamkhani - TriplyDB

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

http://www.wikidata.org/entity/Q24600148

about

Genome-wide association between branch point properties and alternative splicing Single nucleotide polymorphism-based validation of exonic splicing enhancers The SR protein family Serine-arginine (SR) protein-like factors that antagonize authentic SR proteins and regulate alternative splicing XE7: a novel splicing factor that interacts with ASF/SF2 and ZNF265 Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins Acetylation and phosphorylation of SRSF2 control cell fate decision in response to cisplatin Splicing factor SRSF6 promotes hyperplasia of sensitized skin SRp30c is a repressor of 3' splice site utilization.Sorting out the complexity of SR protein functions Sequence information for the splicing of human pre-mRNA identified by support vector machine classification A bidirectional SF2/ASF- and SRp40-dependent splicing enhancer regulates human immunodeficiency virus type 1 rev, env, vpu, and nef gene expression Limb-girdle muscular dystrophy type 2H associated with mutation in TRIM32, a putative E3-ubiquitin-ligase gene Splicing regulation: from a parts list of regulatory elements to an integrated splicing code Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts ZNF265--a novel spliceosomal protein able to induce alternative splicing The SRm160/300 splicing coactivator is required for exon-enhancer function Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing Splicing in action: assessing disease causing sequence changes Using RNA secondary structures to guide sequence motif finding towards single-stranded regions The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons Finding signals that regulate alternative splicing in the post-genomic era Variation in alternative splicing across human tissues Exonization of AluYa5 in the human ACE gene requires mutations in both 3' and 5' splice sites and is facilitated by a conserved splicing enhancer.Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes.The Tgif2 gene contains a retained intron within the coding sequence.Evolutionary conservation analysis increases the colocalization of predicted exonic splicing enhancers in the BRCA1 gene with missense sequence changes and in-frame deletions, but not polymorphisms Decoding mechanisms by which silent codon changes influence protein biogenesis and function Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor The STAR/GSG family protein rSLM-2 regulates the selection of alternative splice sites Two proteins essential for apolipoprotein B mRNA editing are expressed from a single gene through alternative splicing TIA proteins are necessary but not sufficient for the tissue-specific splicing of the myosin phosphatase targeting subunit 1 Characterization of splice variants of the genes encoding human mitochondrial HMG-CoA lyase and HMG-CoA synthase, the main enzymes of the ketogenesis pathway Differential effects of the SR proteins 9G8, SC35, ASF/SF2, and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA RESCUE-ESE identifies candidate exonic splicing enhancers in vertebrate exons SR proteins and galectins: what's in a name?Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA Inference of splicing regulatory activities by sequence neighborhood analysis Interplay between exonic splicing enhancers, mRNA processing, and mRNA surveillance in the dystrophic Mdx mouse

P2860

Q21092523-053CD1A8-B603-40C7-9D78-E2C367911984 Q21092824-968DE146-C312-43B8-A764-12295E3BB734 Q21183897-07BDE1E1-4AC6-4633-8A6D-BD0A1AAD8DD3 Q24291847-1EAA0DE8-87B7-4116-9878-9A4206298920 Q24303694-FE4A7BF8-0372-4D4A-9C16-A3490F067FAB Q24308775-F18EDA7B-07F9-4304-9B6B-A31356F5EA04 Q24316205-310B905C-4502-4F85-B2D1-533C013E84FE Q24321623-9A473894-969D-40B4-B9B9-0F6138344163 Q24537431-E9848351-3C4B-4D8E-B791-7CFC9DC44520 Q24539813-8CE7BA71-C64A-439E-865D-D80265F929A2 Q24561544-8C2451EE-B860-44C6-8869-52704A2C153F Q24563281-60252413-7D3C-4DB2-A7A6-21E24E7EF100 Q24563710-1182A4D7-A2DC-4846-B27F-6F9537DC7324 Q24642620-A194D965-3BFC-4570-AD85-9C2F39D09BB2 Q24651972-9B32EDD2-DFE2-4E8B-981B-4CAD3F2A4A74 Q24654069-BBD77BCB-E642-4562-8FCF-B26DFBB30B7E Q24658182-B879A315-F6FD-4C56-95CB-B7C094D3A747 Q24672665-0BBEE590-A7AD-4598-9B8D-E1D4A53D1D88 Q24674554-61426BE5-E90A-4F8A-AD2A-451AEDCAA8C8 Q24682658-5DDA27F0-35B5-460F-B031-7D61E112550B Q24801957-E22D4077-FF8A-4715-9D1D-0467FBA08F7F Q24806394-4EBD4F45-0BF4-4E1A-8E7D-C98EBADD5A9F Q24809417-08D14620-3A29-4A69-8542-B0D5D9B4064C Q24811113-47CBE17F-2359-42A4-8311-06AA60187C28 Q24812666-9AFD6C4E-E541-4FB2-B026-AC590DD93A5D Q25256819-D3FD4D4B-D510-4E44-953F-1BBA506F571B Q25257572-7B27424A-B9FA-4FCD-8229-70A214D501FF Q26821951-3635199E-63CF-4943-BA0C-E7FAC8E2CD0D Q28138789-D0DB3C8F-460A-4FD5-9000-A2EC3F91648A Q28140466-1A9AA309-412A-4F1E-9F32-E72DB3C65101 Q28216838-93FA7C1B-A516-419D-B01B-F8F3A7426FE7 Q28239987-63F1F6BE-8123-4493-90E4-52261814AA45 Q28249240-29F4CFBF-FC48-4840-A6F7-AC61D382AA45 Q28259926-4CEA4A5B-4082-4712-A6FE-44094A55860A Q28268426-E1E81CFC-EF78-4288-9651-F3219DA3614D Q28286108-1FB85372-6A80-4DF6-9898-CD6CC95FB47B Q28307230-D26C5A6A-1895-43C2-9F30-59C1FAD9EF09 Q28367479-9ED0B02F-6221-4E26-8B57-19556EE2AD2C Q28469075-F899387E-480F-49C8-92F0-A72A2202B7CF Q28469191-8CA2CD30-7CC4-4B5B-A5D7-FD91433D099B

P2860

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

http://www.wikidata.org/entity/Q24600148

description

1998 nî lūn-bûn

@nan

1998 թուականի Յուլիսին հրատարակուած գիտական յօդուած

@hyw

1998 թվականի հուլիսին հրատարակված գիտական հոդված

@hy

1998年の論文

@ja

1998年論文

@yue

1998年論文

@zh-hant

1998年論文

@zh-hk

1998年論文

@zh-mo

1998年論文

@zh-tw

1998年论文

@wuu

name

Identification of functional e ...... ized by individual SR proteins

@ast

Identification of functional e ...... ized by individual SR proteins

@en

Identification of functional e ...... ized by individual SR proteins

@nl

type

label

Identification of functional e ...... ized by individual SR proteins

@ast

Identification of functional e ...... ized by individual SR proteins

@en

Identification of functional e ...... ized by individual SR proteins

@nl

prefLabel

Identification of functional e ...... ized by individual SR proteins

@ast

Identification of functional e ...... ized by individual SR proteins

@en

Identification of functional e ...... ized by individual SR proteins

@nl

P1433

Q24600148-98119A49-ED9B-4308-907B-23FE6B6E81D0

P1476

Q24600148-C7A84357-7CA6-4A9B-8DBC-DF01C8AF3091

P2093

Q24600148-8E37469E-D9C0-489C-81EE-D89EA1138694

Q24600148-B47779C0-57DF-47D3-8726-72D0BD6946C4

Q24600148-FD97F482-BCA1-42A8-9F61-1DDB58757819

P2860

Q24600148-0692E42E-15BB-4F8C-A843-EAEA7E878715

Q24600148-0974684A-F7FA-4279-BD87-C11800DB66E3

Q24600148-0CA0EEAA-1149-4868-8590-3D1862820D29

Q24600148-0D4D39BD-D699-49A7-B97C-73E86ECD613C

Q24600148-0F5040B5-4FF5-4D99-A89F-22F244DD8F89

Q24600148-12D6D1D1-E926-4191-AD45-06EDB24153F8

Q24600148-1855F772-6297-4959-8C3F-32C5629F100C

Q24600148-189C7EED-0795-4F00-9DE6-64871FEAA83B

Q24600148-1D837593-0666-4C8F-9DBC-73ED6612B192

Q24600148-1E41F83F-C42E-416E-9C6E-18D1993E842F

P304

Q24600148-5401CBC4-F458-40E2-BF99-708786E9B3EC

P31

Q24600148-AE2832A8-3579-4BC0-9427-E49BE797552F

P356

Q24600148-7E1BAE98-E9B3-4F40-AFC9-077CCE60782D

P407

Q24600148-3233D8EA-95A9-4CDF-8ADE-ACB53C30A4ED

P433

Q24600148-DDCCFB15-F1AD-42C3-9117-055DC6F0EFD9

P478

Q24600148-38A5E334-295D-4892-BD77-9EC782C64592

P577

Q24600148-C3835971-B9A4-4A25-926B-97E82C94BF47

P5875

Q24600148-FD31F53F-36C0-4F9B-B968-0F96A72F9A71

P698

Q24600148-266C0AAF-E2F2-42C7-A972-88F10709664B

P932

Q24600148-1F989479-E71B-4DB8-8545-376512A34A40

P356

P1433

Genes & Development

P1476

Identification of functional e ...... ized by individual SR proteins

@en

P2093

A R Krainer

http://www.w3.org/2001/XMLSchema#string

H X Liu

http://www.w3.org/2001/XMLSchema#string

M Zhang

http://www.w3.org/2001/XMLSchema#string

P2860

Human SR proteins and isolation of a cDNA encoding SRp75

Identification and characterization of three members of the human SR family of pre-mRNA splicing factors

Characterization and cloning of the human splicing factor 9G8: a novel 35 kDa factor of the serine/arginine protein family

Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators

The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities

A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm

Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors

Functional properties of p54, a novel SR protein active in constitutive and alternative splicing

A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer

Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

P304

1998-2012

http://www.w3.org/2001/XMLSchema#string

P31

scholarly article

P356

10.1101/GAD.12.13.1998

http://www.w3.org/2001/XMLSchema#string

P407

P433

13

http://www.w3.org/2001/XMLSchema#string

P478

12

http://www.w3.org/2001/XMLSchema#string

P577

1998-07-01T00:00:00Z

http://www.w3.org/2001/XMLSchema#dateTime

P5875

13634284

http://www.w3.org/2001/XMLSchema#string

P698

9649504

http://www.w3.org/2001/XMLSchema#string

P932

316967

http://www.w3.org/2001/XMLSchema#string