Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts - Test2 - elhamkhani - TriplyDB

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

http://www.wikidata.org/entity/Q24651972

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The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation The cellular EJC interactome reveals higher-order mRNP structure and an EJC-SR protein nexus Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins HITS-CLIP: panoramic views of protein-RNA regulation in living cells Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans RNA-Seq methods for transcriptome analysis Specificity and nonspecificity in RNA-protein interactions Posttranscriptional Regulation of Splicing Factor SRSF1 and Its Role in Cancer Cell Biology RNA-binding proteins in neurodegeneration: Seq and you shall receive Identification of RNA-protein interaction networks using PAR-CLIP Isolated pseudo-RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition Context-dependent control of alternative splicing by RNA-binding proteins PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis Identification of evolutionarily conserved exons as regulated targets for the splicing activator tra2β in development CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data Using bioinformatics to predict the functional impact of SNVs Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches RNA processing and its regulation: global insights into biological networks PfSR1 controls alternative splicing and steady-state RNA levels in Plasmodium falciparum through preferential recognition of specific RNA motifs A deep learning framework for modeling structural features of RNA-binding protein targets.Statistical and Computational Methods for High-Throughput Sequencing Data Analysis of Alternative Splicing.Motif-based analysis of large nucleotide data sets using MEME-ChIP.RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates.Noncanonical transcript forms in yeast and their regulation during environmental stress Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation.RNA-seq: from technology to biology.The epithelial splicing factors ESRP1 and ESRP2 positively and negatively regulate diverse types of alternative splicing events.Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs RNase-mediated protein footprint sequencing reveals protein-binding sites throughout the human transcriptome GraphProt: modeling binding preferences of RNA-binding proteins.Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.Feed-forward regulation of a cell fate determinant by an RNA-binding protein generates asymmetry in yeast No more non-model species: the promise of next generation sequencing for comparative immunology.Emerging functions of SRSF1, splicing factor and oncoprotein, in RNA metabolism and cancer.An alternative splicing network links cell-cycle control to apoptosis High-throughput binding analysis determines the binding specificity of ASF/SF2 on alternatively spliced human pre-mRNAs.

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P2860

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

http://www.wikidata.org/entity/Q24651972

description

2009 nî lūn-bûn

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2009 թուականի Մարտին հրատարակուած գիտական յօդուած

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2009 թվականի մարտին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

@zh-hk

2009年論文

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2009年論文

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2009年论文

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name

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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type

label

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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prefLabel

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

@ast

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

@en

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

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Genome Research

P1476

Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

@en

P2093

Jeremy R Sanford

http://www.w3.org/2001/XMLSchema#string

Matthew Mort

http://www.w3.org/2001/XMLSchema#string

Sean D Mooney

http://www.w3.org/2001/XMLSchema#string

Xin Wang

http://www.w3.org/2001/XMLSchema#string

Yunlong Liu

http://www.w3.org/2001/XMLSchema#string

P2860

Single nucleotide polymorphism-based validation of exonic splicing enhancers

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

Ultraconserved Elements in the Human Genome

Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

The role of U2AF35 and U2AF65 in enhancer-dependent splicing

Genome sequencing in microfabricated high-density picolitre reactors

The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

A specific subset of SR proteins shuttles continuously between the nucleus and the cytoplasm

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381-94

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scholarly article

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254242

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10.1101/GR.082503.108

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3

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19

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P50

David N. Cooper

Howard J Edenberg

Natalia Vanduyn

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2009-03-01T00:00:00Z

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P5875

23713615

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19116412

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2661799

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