Inference of splicing regulatory activities by sequence neighborhood analysis
about
Genome-wide association between branch point properties and alternative splicingUsing positional distribution to identify splicing elements and predict pre-mRNA processing defects in human genesSplicing regulation: from a parts list of regulatory elements to an integrated splicing codePositive selection acting on splicing motifs reflects compensatory evolutionGlobal analysis of alternative splicing differences between humans and chimpanzeesComputational prediction of splicing regulatory elements shared by Tetrapoda organismsThe pivotal roles of TIA proteins in 5' splice-site selection of alu exons and across evolutionDiscovery and analysis of evolutionarily conserved intronic splicing regulatory elements.Features generated for computational splice-site prediction correspond to functional elements.Pre-mRNA secondary structures influence exon recognition.Strategies for identifying RNA splicing regulatory motifs and predicting alternative splicing eventsSelection against tandem splice sites affecting structured protein regions.The Alternative Splicing Mutation Database: a hub for investigations of alternative splicing using mutational evidenceCalculation of splicing potential from the Alternative Splicing Mutation DatabasePrediction of alternatively skipped exons and splicing enhancers from exon junction arrays.Evolution of alternative splicing regulation: changes in predicted exonic splicing regulators are not associated with changes in alternative splicing levels in primates.GC content around splice sites affects splicing through pre-mRNA secondary structuresGenomic features defining exonic variants that modulate splicing.CodingMotif: exact determination of overrepresented nucleotide motifs in coding sequencesIdentification of conserved splicing motifs in mutually exclusive exons of 15 insect speciesA systematic analysis of intronic sequences downstream of 5' splice sites reveals a widespread role for U-rich motifs and TIA1/TIAL1 proteins in alternative splicing regulation.Ab initio prediction of mutation-induced cryptic splice-site activation and exon skipping.COMIT: identification of noncoding motifs under selection in coding sequences.SROOGLE: webserver for integrative, user-friendly visualization of splicing signalsMolecular genetic analysis of the PLP1 gene in 38 families with PLP1-related disorders: identification and functional characterization of 11 novel PLP1 mutations.In silico screening based on predictive algorithms as a design tool for exon skipping oligonucleotides in Duchenne muscular dystrophyExploring the somatic NF1 mutational spectrum associated with NF1 cutaneous neurofibromasThe role of short RNA loops in recognition of a single-hairpin exon derived from a mammalian-wide interspersed repeat.Coevolutionary networks of splicing cis-regulatory elementsClinical implications of human population differences in genome-wide rates of functional genotypesAssessing the fraction of short-distance tandem splice sites under purifying selectionExon creation and establishment in human genesImproved identification of conserved cassette exons using Bayesian networks.A computational approach for genome-wide mapping of splicing factor binding sites.Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.C. elegans RNA-binding protein GLD-1 recognizes its multiple targets using sequence, context, and structural information to repress translation.Redirecting splicing with bifunctional oligonucleotides.Predicting in vivo binding sites of RNA-binding proteins using mRNA secondary structure.Mutations of Pre-mRNA Splicing Regulatory Elements: Are Predictions Moving Forward to Clinical Diagnostics?Computational recognition for long non-coding RNA (lncRNA): Software and databases.
P2860
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P2860
Inference of splicing regulatory activities by sequence neighborhood analysis
description
2006 nî lūn-bûn
@nan
2006 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի նոյեմբերին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Inference of splicing regulatory activities by sequence neighborhood analysis
@ast
Inference of splicing regulatory activities by sequence neighborhood analysis
@en
Inference of splicing regulatory activities by sequence neighborhood analysis
@nl
type
label
Inference of splicing regulatory activities by sequence neighborhood analysis
@ast
Inference of splicing regulatory activities by sequence neighborhood analysis
@en
Inference of splicing regulatory activities by sequence neighborhood analysis
@nl
prefLabel
Inference of splicing regulatory activities by sequence neighborhood analysis
@ast
Inference of splicing regulatory activities by sequence neighborhood analysis
@en
Inference of splicing regulatory activities by sequence neighborhood analysis
@nl
P2093
P2860
P1433
P1476
Inference of splicing regulatory activities by sequence neighborhood analysis
@en
P2093
Aniket Schneider
Christopher B Burge
Gene W Yeo
Michael B Stadler
Noam Shomron
P2860
P356
10.1371/JOURNAL.PGEN.0020191
P407
P50
P577
2006-11-24T00:00:00Z