Structure-based activity prediction for an enzyme of unknown function - Test2 - elhamkhani - TriplyDB

Structure-based activity prediction for an enzyme of unknown function

Structure-based activity prediction for an enzyme of unknown function

http://www.wikidata.org/entity/Q24642801

about

Metabolomics annotates ABHD3 as a physiologic regulator of medium-chain phospholipids The Enzyme Function Initiative.Discovery of a dipeptide epimerase enzymatic function guided by homology modeling and virtual screening Machine-learning scoring functions to improve structure-based binding affinity prediction and virtual screening Leveraging structure for enzyme function prediction: methods, opportunities, and challenges Lessons from structural genomics Structure-based function prediction of uncharacterized protein using binding sites comparison A Common Catalytic Mechanism for Proteins of the HutI Family †Functional Annotation and Three-Dimensional Structure of Dr0930 from Deinococcus radiodurans , a Close Relative of Phosphotriesterase in the Amidohydrolase Superfamily † ‡Functional Identification of Incorrectly Annotated Prolidases from the Amidohydrolase Superfamily of Enzymes † ‡Functional Annotation of Two New Carboxypeptidases from the Amidohydrolase Superfamily of Enzymes Annotating Enzymes of Uncertain Function: The Deacylation of d -Amino Acids by Members of the Amidohydrolase Superfamily ,Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis ,Structure, Mechanism, and Substrate Profile for Sco3058: The Closest Bacterial Homologue to Human Renal Dipeptidase,The Hunt for 8-Oxoguanine Deaminase Discovery and Structure Determination of the Orphan Enzyme Isoxanthopterin Deaminase,Three-Dimensional Structure and Catalytic Mechanism of Cytosine Deaminase Rescue of the Orphan Enzyme Isoguanine Deaminase 3-Keto-5-aminohexanoate Cleavage Enzyme: A COMMON FOLD FOR AN UNCOMMON CLAISEN-TYPE CONDENSATION Methylthioadenosine Deaminase in an Alternative Quorum Sensing Pathway in Pseudomonas aeruginosa Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily Deamination of 6-Aminodeoxyfutalosine in Menaquinone Biosynthesis by Distantly Related Enzymes Discovery of new enzymes and metabolic pathways by using structure and genome context Substrate Deconstruction and the Nonadditivity of Enzyme Recognition Molecular characterization of novel pyridoxal-5′-phosphate-dependent enzymes from the human microbiome Structure-Guided Functional Characterization of Enediyne Self-Sacrifice Resistance Proteins, CalU16 and CalU19 Covalent docking of large libraries for the discovery of chemical probes Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies Quantitative comparison of catalytic mechanisms and overall reactions in convergently evolved enzymes: implications for classification of enzyme function Structure-guided discovery of new deaminase enzymes Activity-based metabolomic profiling of enzymatic function: identification of Rv1248c as a mycobacterial 2-hydroxy-3-oxoadipate synthase Covalent docking predicts substrates for haloalkanoate dehalogenase superfamily phosphatases Towards structural systems pharmacology to study complex diseases and personalized medicine The future of crystallography in drug discovery.webPDBinder: a server for the identification of ligand binding sites on protein structures Outcome of a workshop on applications of protein models in biomedical research ZINC: a free tool to discover chemistry for biology Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate.Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers.Docking screens: right for the right reasons?

P2860

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P2860

Structure-based activity prediction for an enzyme of unknown function

http://www.wikidata.org/entity/Q24642801

description

2007 nî lūn-bûn

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2007 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2007 թվականի օգոստոսին հրատարակված գիտական հոդված

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2007年の論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年論文

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2007年论文

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name

Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

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type

label

Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

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prefLabel

Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

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Structure-based activity prediction for an enzyme of unknown function

@en

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Alexander A Fedorov

http://www.w3.org/2001/XMLSchema#string

Brian K Shoichet

http://www.w3.org/2001/XMLSchema#string

Elena Fedorov

http://www.w3.org/2001/XMLSchema#string

Johannes C Hermann

http://www.w3.org/2001/XMLSchema#string

Ricardo Marti-Arbona

http://www.w3.org/2001/XMLSchema#string

P2860

A proficient enzyme

KEGG: kyoto encyclopedia of genes and genomes

Hierarchical docking of databases of multiple ligand conformations

Can sequence determine function?

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

A model binding site for testing scoring functions in molecular docking

ZINC--a free database of commercially available compounds for virtual screening

Likelihood-enhanced fast rotation functions

Virtual screening against highly charged active sites: identifying substrates of alpha-beta barrel enzymes.

Nuclear hormone receptor targeted virtual screening.

P2888

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775-9

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10.1038/NATURE05981

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7155

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448

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Frank M Raushel

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6235052

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1015382306

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17603473

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2254328

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