The role of DNA shape in protein-DNA recognition - Test2 - elhamkhani - TriplyDB

The role of DNA shape in protein-DNA recognition

The role of DNA shape in protein-DNA recognition

http://www.wikidata.org/entity/Q24658173

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Non-B DB: a database of predicted non-B DNA-forming motifs in mammalian genomes New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape Homeodomain proteins: an update Disentangling the many layers of eukaryotic transcriptional regulation DNA dynamics and single-molecule biology Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes Two arginine residues suppress the flexibility of nucleosomal DNA in the canonical nucleosome core Structural determinants of specific DNA-recognition by the THAP zinc finger Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs The shape of the DNA minor groove directs binding by the DNA-bending protein Fis Unusual Target Site Disruption by the Rare-Cutting HNH Restriction Endonuclease PacI Minor Groove Orientation of the KWKK Peptide Tethered via the N-Terminal Amine to the Acrolein-Derived 1, N 2 -γ-Hydroxypropanodeoxyguanosine Lesion with a Trimethylene Linkage,Structural Insights into the Quinolone Resistance Mechanism of Mycobacterium tuberculosis DNA Gyrase Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins Crystal structures of exonuclease in complex with DNA suggest an electrostatic ratchet mechanism for processivity The crystal structure of the TetR family transcriptional repressor SimR bound to DNA and the role of a flexible N-terminal extension in minor groove binding DNA Binding by GATA Transcription Factor Suggests Mechanisms of DNA Looping and Long-Range Gene Regulation Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of Ler Crystal structure of the DNA-bound VapBC2 antitoxin/toxin pair from Rickettsia felis Molecular Basis for Sequence-Dependent Induced DNA Bending Molecular Basis of the Activity of SinR Protein, the Master Regulator of Biofilm Formation in Bacillus subtilis Structure-Function Studies of DNA Binding Domain of Response Regulator KdpE Reveals Equal Affinity Interactions at DNA Half-Sites Mechanism of Origin DNA Recognition and Assembly of an Initiator-Helicase Complex by SV40 Large Tumor Antigen Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion Structures of complexes comprised of Fischerella transcription factor HetR with Anabaena DNA targets Studies of IscR reveal a unique mechanism for metal-dependent regulation of DNA binding specificity Control of DNA minor groove width and Fis protein binding by the purine 2-amino group Structures of the HIN Domain:DNA Complexes Reveal Ligand Binding and Activation Mechanisms of the AIM2 Inflammasome and IFI16 Receptor Investigation of DNA sequence recognition by a streptomycete MarR family transcriptional regulator through surface plasmon resonance and X-ray crystallography The Transcription Factor AmrZ Utilizes Multiple DNA Binding Modes to Recognize Activator and Repressor Sequences of Pseudomonas aeruginosa Virulence Genes Structural studies of p53 inactivation by DNA-contact mutations and its rescue by suppressor mutations via alternative protein-DNA interactions Structure of a new DNA-binding domain which regulates pathogenesis in a wide variety of fungi The DNA-binding domain of BenM reveals the structural basis for the recognition of a T-N11-A sequence motif by LysR-type transcriptional regulators β-Arm flexibility of HU from Staphylococcus aureus dictates the DNA-binding and recognition mechanism Protein-DNA binding in high-resolution Bacterial regulon evolution: distinct responses and roles for the identical OmpR proteins of Salmonella Typhimurium and Escherichia coli in the acid stress response Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactions Structural basis for the cooperative DNA recognition by Smad4 MH1 dimers

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The role of DNA shape in protein-DNA recognition

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2009 nî lūn-bûn

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2009 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի հոտեմբերին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

@zh-mo

2009年論文

@zh-tw

2009年论文

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name

The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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type

label

The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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The role of DNA shape in protein-DNA recognition

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Alona Sosinsky

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Peng Liu

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Remo Rohs

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Richard S Mann

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Sean M West

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P2860

Monomeric complex of human orphan estrogen related receptor-2 with DNA: a pseudo-dimer interface mediates extended half-site recognition

A genomic code for nucleosome positioning

A-tract clusters may facilitate DNA packaging in bacterial nucleoid.

Structure of a DNA-bound Ultrabithorax-Extradenticle homeodomain complex

DNA-binding mechanism of the monomeric orphan nuclear receptor NGFI-B

DNA bending by an adenine-thymine tract and its role in gene regulation

Differential dimer activities of the transcription factor Oct-1 by DNA-induced interface swapping

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum

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10.1038/NATURE08473

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7268

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461

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1036449296

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19865164

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2793086

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