Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape - Test2 - elhamkhani - TriplyDB

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

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Analysis of Genomic Sequence Motifs for Deciphering Transcription Factor Binding and Transcriptional Regulation in Eukaryotic Cells Using protein-binding microarrays to study transcription factor specificity: homologs, isoforms and complexes Cell-Autonomous and Non-Cell-Autonomous Regulation of a Feeding State-Dependent Chemoreceptor Gene via MEF-2 and bHLH Transcription Factors Affinity regression predicts the recognition code of nucleic acid–binding proteins Protein-DNA binding in high-resolution Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation Genetic and epigenetic fine mapping of causal autoimmune disease variants Varying levels of complexity in transcription factor binding motifs.Evolving gene regulatory networks into cellular networks guiding adaptive behavior: an outline how single cells could have evolved into a centralized neurosensory system.A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq.Coregulation of transcription factor binding and nucleosome occupancy through DNA features of mammalian enhancers.An efficient algorithm for improving structure-based prediction of transcription factor binding sites A genome-scale resource for the functional characterization of Arabidopsis transcription factors.Absence of a simple code: how transcription factors read the genome Structure-based modeling of protein: DNA specificity.Deconvolving the recognition of DNA shape from sequence.High-resolution specificity from DNA sequencing highlights alternative modes of Lac repressor binding.Protein-DNA binding in the absence of specific base-pair recognition Operator recognition by the ROK transcription factor family members, NagC and Mlc Evolving insights on how cytosine methylation affects protein-DNA binding.Identifying transcriptional cis-regulatory modules in animal genomes.Genome-wide features of neuroendocrine regulation in Drosophila by the basic helix-loop-helix transcription factor DIMMED.GBshape: a genome browser database for DNA shape annotations.Quantitative modeling of transcription factor binding specificities using DNA shape.ChIP-nexus enables improved detection of in vivo transcription factor binding footprints.bHLH106 Integrates Functions of Multiple Genes through Their G-Box to Confer Salt Tolerance on Arabidopsis Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.Survey of protein-DNA interactions in Aspergillus oryzae on a genomic scale Core promoter sequence in yeast is a major determinant of expression level.Unraveling determinants of transcription factor binding outside the core binding site.Binding of transcription factor GabR to DNA requires recognition of DNA shape at a location distinct from its cognate binding site.SiteOut: An Online Tool to Design Binding Site-Free DNA Sequences.Investigations of the CLOCK and BMAL1 Proteins Binding to DNA: A Molecular Dynamics Simulation Study.GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays.A widespread role of the motif environment in transcription factor binding across diverse protein families Combinatorial complexity in a transcriptionally centered signaling hub in Arabidopsis.Genetic basis of allochronic differentiation in the fall armyworm.

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P2860

Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape

http://www.wikidata.org/entity/Q24630737

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2013 nî lūn-bûn

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2013 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2013 թվականի ապրիլին հրատարակված գիտական հոդված

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2013年の論文

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2013年論文

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2013年論文

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2013年論文

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2013年論文

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Genomic regions flanking E-box ...... tion factors through DNA shape

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Genomic regions flanking E-box ...... tion factors through DNA shape

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Genomic regions flanking E-box ...... tion factors through DNA shape

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type

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Genomic regions flanking E-box ...... tion factors through DNA shape

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Genomic regions flanking E-box ...... tion factors through DNA shape

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Genomic regions flanking E-box ...... tion factors through DNA shape

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prefLabel

Genomic regions flanking E-box ...... tion factors through DNA shape

@ast

Genomic regions flanking E-box ...... tion factors through DNA shape

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Genomic regions flanking E-box ...... tion factors through DNA shape

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Genomic regions flanking E-box ...... tion factors through DNA shape

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John Horton

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Martha L Bulyk

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Ning Shen

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Raluca Gordân

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Remo Rohs

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Tianyin Zhou

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P2860

Crystal structure of PHO4 bHLH domain-DNA complex: flanking base recognition

Computational prediction of transcription-factor binding site locations

The accessible chromatin landscape of the human genome

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A natural classification of the basic helix-loop-helix class of transcription factors

A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors

The role of DNA shape in protein-DNA recognition

Disentangling the many layers of eukaryotic transcriptional regulation

Overall structure and sugar dynamics of a DNA dodecamer from homo- and heteronuclear dipolar couplings and 31P chemical shift anisotropy

Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure

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