Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments - Test2 - elhamkhani - TriplyDB

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

http://www.wikidata.org/entity/Q24793879

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The distributions, mechanisms, and structures of metabolite-binding riboswitches Ligand recognition determinants of guanine riboswitches The aptamer core of SAM-IV riboswitches mimics the ligand-binding site of SAM-I riboswitches An enhanced RNA alignment benchmark for sequence alignment programs Automated de novo prediction of native-like RNA tertiary structures Semiautomated improvement of RNA alignments The K-loop, a general feature of the Pyrococcus C/D guide RNAs, is an RNA structural motif related to the K-turn.Single nucleotide RNA choreography Trying on tRNA for Size: RNase P and the T-box Riboswitch as Molecular Rulers The Kink Turn, a Key Architectural Element in RNA Structure Isostericity and tautomerism of base pairs in nucleic acids Ribosomal small subunit domains radiate from a central core.NMR Structures of (rGC U GA G GCU) 2 and (rGC G GA U GCU) 2 : Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs † , ‡Structure of the K-turn U4 RNA: a combined NMR and SANS study The plasticity of a structural motif in RNA: Structural polymorphism of a kink turn as a function of its environment Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA Structure of a rare non-standard sequence k-turn bound by L7Ae protein Determination of the amino acids in yeast ribosomal protein YS11 essential for the recognition of nucleotides in 18 S ribosomal RNA.Solution structure of the K-turn and Specifier Loop domains from the Bacillus subtilis tyrS T-box leader RNA Arrangement of 3D structural motifs in ribosomal RNA Quantum chemical studies of nucleic acids: can we construct a bridge to the RNA structural biology and bioinformatics communities?The building blocks and motifs of RNA architecture Yeast as a model of human mitochondrial tRNA base substitutions: investigation of the molecular basis of respiratory defects Mg2+ binding and archaeosine modification stabilize the G15 C48 Levitt base pair in tRNAs 3D RNA and Functional Interactions from Evolutionary Couplings Twist-joints and double twist-joints in RNA structure.Predicting RNA 3D structure using a coarse-grain helix-centered model Predicting RNA secondary structure by the comparative approach: how to select the homologous sequences.Compensatory mutations in the L30e kink-turn RNA-protein complex.Generating new specific RNA interaction interfaces using C-loops Interactions of noncanonical motifs with hnRNP A2 promote activity-dependent RNA transport in neurons.Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EM FR3D: finding local and composite recurrent structural motifs in RNA 3D structures On the role of Hoogsteen:Hoogsteen interactions in RNA: ab initio investigations of structures and energies A novel double kink-turn module in euryarchaeal RNase P RNAs.New molecular engineering approaches for crystallographic studies of large RNAs Discrete RNA libraries from pseudo-torsional space Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment.A universal RNA structural motif docking the elbow of tRNA in the ribosome, RNAse P and T-box leaders.Natural selection is not required to explain universal compositional patterns in rRNA secondary structure categories

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P2860

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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2005 nî lūn-bûn

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2005年の論文

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2005年論文

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2005年论文

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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prefLabel

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments

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Aurélie Lescoute

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Christian Massire

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Neocles B Leontis

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

Geometric nomenclature and classification of RNA base pairs

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

The European ribosomal RNA database

RNA tertiary interactions in the large ribosomal subunit: the A-minor motif

Tools for the automatic identification and classification of RNA base pairs

Ribosomal protein L1 recognizes the same specific structural motif in its target sites on the autoregulatory mRNA and 23S rRNA

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

Structure of the 30S ribosomal subunit

Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment

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10.1093/NAR/GKI535

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