Construction and completion of flux balance models from pathway databases
about
Synthetic Ecology of Microbes: Mathematical Models and ApplicationsSoftware applications for flux balance analysisComputational Methods for Modification of Metabolic NetworksMultiMetEval: comparative and multi-objective analysis of genome-scale metabolic modelsReconstruction and validation of a genome-scale metabolic model for the filamentous fungus Neurospora crassa using FARMMultiscale Metabolic Modeling of C4 Plants: Connecting Nonlinear Genome-Scale Models to Leaf-Scale Metabolism in Developing Maize LeavesConsistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel ApproachLinking genome-scale metabolic modeling and genome annotationRegulatory network operations in the Pathway Tools software.A geographically-diverse collection of 418 human gut microbiome pathway genome databases.High-throughput comparison, functional annotation, and metabolic modeling of plant genomes using the PlantSEED resourceA genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.Efficiently gap-filling reaction networks.EcoCyc: fusing model organism databases with systems biology.Curation accuracy of model organism databasesExtracting reaction networks from databases-opening Pandora's box.Determining microbial products and identifying molecular targets in the human microbiome.MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information.Computational strategies for a system-level understanding of metabolism.Semi-automated curation of metabolic models via flux balance analysis: a case study with Mycoplasma gallisepticumSolving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti.Insights from 20 years of bacterial genome sequencing.Metabolic pathways for the whole communityA curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors.Transparency in metabolic network reconstruction enables scalable biological discoveryGap detection for genome-scale constraint-based models.Knowledge representation in metabolic pathway databases.Software platforms to facilitate reconstructing genome-scale metabolic networks.Bioenergetics of Monoterpenoid Essential Oil Biosynthesis in Non-Photosynthetic Glandular Trichomes.Genome-scale modelling of microbial metabolism with temporal and spatial resolution.BoostGAPFILL: improving the fidelity of metabolic network reconstructions through integrated constraint and pattern-based methods.Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine.The secondary metabolite bioinformatics portal: Computational tools to facilitate synthetic biology of secondary metabolite production.Emerging whole-cell modeling principles and methods.The BioCyc collection of microbial genomes and metabolic pathways.Evaluation of reaction gap-filling accuracy by randomization.How accurate is automated gap filling of metabolic models?
P2860
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P2860
Construction and completion of flux balance models from pathway databases
description
2012 nî lūn-bûn
@nan
2012 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
Construction and completion of flux balance models from pathway databases
@ast
Construction and completion of flux balance models from pathway databases
@en
type
label
Construction and completion of flux balance models from pathway databases
@ast
Construction and completion of flux balance models from pathway databases
@en
prefLabel
Construction and completion of flux balance models from pathway databases
@ast
Construction and completion of flux balance models from pathway databases
@en
P2093
P2860
P356
P1433
P1476
Construction and completion of flux balance models from pathway databases
@en
P2093
Mario Latendresse
Markus Krummenacker
Miles Trupp
P2860
P304
P356
10.1093/BIOINFORMATICS/BTR681
P407
P577
2012-01-18T00:00:00Z