about
Identifying fusion transcripts using next generation sequencingPractical aspects of NGS-based pathways analysis for personalized cancer science and medicineAdvanced Applications of RNA Sequencing and ChallengesComprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas.Integrated genetic and pharmacologic interrogation of rare cancersDistinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas.INTEGRATE: gene fusion discovery using whole genome and transcriptome data.Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.Discovering and understanding oncogenic gene fusions through data intensive computational approachesChimerDB 3.0: an enhanced database for fusion genes from cancer transcriptome and literature data miningChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data.MRI-Guided Stereotactic Biopsy of Murine GBM for Spatiotemporal Molecular Genomic AssessmentMYB-QKI rearrangements in angiocentric glioma drive tumorigenicity through a tripartite mechanism.Comprehensive Pan-Genomic Characterization of Adrenocortical Carcinoma.Systematic identification of single amino acid variants in glioma stem-cell-derived chromosome 19 proteinsAlternative applications for distinct RNA sequencing strategies.Co-clinical assessment identifies patterns of BRAF inhibitor resistance in melanomaThe landscape and therapeutic relevance of cancer-associated transcript fusions.The duplication mutation of Quebec platelet disorder dysregulates PLAU, but not C10orf55, selectively increasing production of normal PLAU transcripts by megakaryocytes but not granulocytes.Landscape of gene fusions in epithelial cancers: seq and ye shall find.Novel kinase fusion transcripts found in endometrial cancerDirect Transcriptional Consequences of Somatic Mutation in Breast CancerMutational burdens and evolutionary ages of thyroid follicular adenoma are comparable to those of follicular carcinoma.Whole-exome and transcriptome sequencing of refractory diffuse large B-cell lymphoma.Systematically evaluating interfaces for RNA-seq analysis from a life scientist perspective.Decomposing Oncogenic Transcriptional Signatures to Generate Maps of Divergent Cellular States.GFusion: an Effective Algorithm to Identify Fusion Genes from Cancer RNA-Seq Data.An immunogenic personal neoantigen vaccine for patients with melanoma.Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma.chimeraviz: A tool for visualizing chimeric RNA.Elucidating the cancer-specific genetic alteration spectrum of glioblastoma derived cell lines from whole exome and RNA sequencing.Characterization of fusion genes in common and rare epithelial ovarian cancer histologic subtypeshppRNA-a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples.Development of a RNA-Seq Based Prognostic Signature in Lung Adenocarcinoma.Clonal evolution of glioblastoma under therapy.A comparative assessment of clinical whole exome and transcriptome profiling across sequencing centers: implications for precision cancer medicine.Integrative Analysis Identifies Four Molecular and Clinical Subsets in Uveal Melanoma.Systematic analysis of telomere length and somatic alterations in 31 cancer types.confFuse: High-Confidence Fusion Gene Detection across Tumor Entities.Tumor Evolution of Glioma-Intrinsic Gene Expression Subtypes Associates with Immunological Changes in the Microenvironment.
P2860
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P2860
description
2014 nî lūn-bûn
@nan
2014 թուականի Ապրիլին հրատարակուած գիտական յօդուած
@hyw
2014 թվականի ապրիլին հրատարակված գիտական հոդված
@hy
2014年の論文
@ja
2014年論文
@yue
2014年論文
@zh-hant
2014年論文
@zh-hk
2014年論文
@zh-mo
2014年論文
@zh-tw
2014年论文
@wuu
name
PRADA: pipeline for RNA sequencing data analysis
@ast
PRADA: pipeline for RNA sequencing data analysis
@en
type
label
PRADA: pipeline for RNA sequencing data analysis
@ast
PRADA: pipeline for RNA sequencing data analysis
@en
prefLabel
PRADA: pipeline for RNA sequencing data analysis
@ast
PRADA: pipeline for RNA sequencing data analysis
@en
P2093
P2860
P921
P356
P1433
P1476
PRADA: pipeline for RNA sequencing data analysis
@en
P2093
Andrey Sivachenko
John N Weinstein
Michael F Berger
Qianghu Wang
Rahulsimham Vegesna
Roel G W Verhaak
Siyuan Zheng
Wandaliz Torres-García
P2860
P304
P356
10.1093/BIOINFORMATICS/BTU169
P407
P50
P577
2014-04-01T00:00:00Z