TopHat-Fusion: an algorithm for discovery of novel fusion transcripts - Test2 - elhamkhani - TriplyDB

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

http://www.wikidata.org/entity/Q27499675

about

Horizontal transfer of expressed genes in a parasitic flowering plant TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions Repetitive DNA and next-generation sequencing: computational challenges and solutions Identifying fusion transcripts using next generation sequencing Next generation sequencing technology and genomewide data analysis: Perspectives for retinal research Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine PacBio Sequencing and Its Applications Biogenesis, identification, and function of exonic circular RNAs Transcriptomic Analysis of Ovaries from Pigs with High And Low Litter Size Quaking promotes monocyte differentiation into pro-atherogenic macrophages by controlling pre-mRNA splicing and gene expression.Mutational Landscapes of Sequential Prostate Metastases and Matched Patient Derived Xenografts during Enzalutamide Therapy A Novel Analytical Strategy to Identify Fusion Transcripts between Repetitive Elements and Protein Coding-Exons Using RNA-Seq CRAC: an integrated approach to the analysis of RNA-seq reads Activating ESR1 mutations in hormone-resistant metastatic breast cancer.Integrated genomic characterization reveals novel, therapeutically relevant drug targets in FGFR and EGFR pathways in sporadic intrahepatic cholangiocarcinoma Integrative clinical genomics of advanced prostate cancer.An intriguing RNA species--perspectives of circularized RNA Massive mitochondrial gene transfer in a parasitic flowering plant clade Chromosomal Rearrangements as Barriers to Genetic Homogenization between Archaic and Modern Humans Fusion of the TBL1XR1 and HMGA1 genes in splenic hemangioma with t(3;6)(q26;p21)The eSNV-detect: a computational system to identify expressed single nucleotide variants from transcriptome sequencing data Open pipelines for integrated tumor genome profiles reveal differences between pancreatic cancer tumors and cell lines Chimeric RNAs in cancer and normal physiology.Open-access synthetic spike-in mRNA-seq data for cancer gene fusions.Discovering chimeric transcripts in paired-end RNA-seq data by using EricScript.Reanalysis of RNA-sequencing data reveals several additional fusion genes with multiple isoforms.NSD3-NUT fusion oncoprotein in NUT midline carcinoma: implications for a novel oncogenic mechanism.SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data.Clinical analysis and interpretation of cancer genome data Computational solutions for omics data.Exploration of the gene fusion landscape of glioblastoma using transcriptome sequencing and copy number data PRADA: pipeline for RNA sequencing data analysis Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq.Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data.Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq.Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data.CRCDA--Comprehensive resources for cancer NGS data analysis.INTEGRATE: gene fusion discovery using whole genome and transcriptome data.Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.Identification of candidate genes for prostate cancer-risk SNPs utilizing a normal prostate tissue eQTL data set

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

http://www.wikidata.org/entity/Q27499675

description

2011 nî lūn-bûn

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2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի օգոստոսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

From RNA-seq reads to differential expression results

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

The transcriptional landscape of the yeast genome defined by RNA sequencing

Accurate whole human genome sequencing using reversible terminator chemistry

Transcriptome sequencing to detect gene fusions in cancer

TopHat: discovering splice junctions with RNA-Seq

A large genome center's improvements to the Illumina sequencing system.

BLAT--the BLAST-like alignment tool

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