A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection. - Test2 - elhamkhani - TriplyDB

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.

A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.

http://www.wikidata.org/entity/Q33751476

about

ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelines Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo Practical aspects of NGS-based pathways analysis for personalized cancer science and medicine Evolutionary Insights into RNA trans-Splicing in Vertebrates Biogenesis, identification, and function of exonic circular RNAs Comparison of circular RNA prediction tools.The Evolution of COP9 Signalosome in Unicellular and Multicellular Organisms Bioinformatics of prokaryotic RNAs Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.The making of a branching annelid: an analysis of complete mitochondrial genome and ribosomal data of Ramisyllis multicaudata Circular RNAs: Biogenesis, Function and Role in Human Diseases.Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro?circBase: a database for circular RNAs.GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.Correlation of circular RNA abundance with proliferation--exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues.CIRI: an efficient and unbiased algorithm for de novo circular RNA identification.Coupling and coordination in gene expression processes with pre-mRNA splicing.Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.From Glacier to Sauna: RNA-Seq of the Human Pathogen Black Fungus Exophiala dermatitidis under Varying Temperature Conditions Exhibits Common and Novel Fungal Response General and MicroRNA-Mediated mRNA Degradation Occurs on Ribosome Complexes in Drosophila Cells.The Utility of Genome Skimming for Phylogenomic Analyses as Demonstrated for Glycerid Relationships (Annelida, Glyceridae).Statistically based splicing detection reveals neural enrichment and tissue-specific induction of circular RNA during human fetal development PTESFinder: a computational method to identify post-transcriptional exon shuffling (PTES) events.MINCR is a MYC-induced lncRNA able to modulate MYC's transcriptional network in Burkitt lymphoma cells Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants.Transcriptome-wide investigation of circular RNAs in rice Comparative analyses of glycerotoxin expression unveil a novel structural organization of the bloodworm venom system A comprehensive overview and evaluation of circular RNA detection tools NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision Circular RNAs in Eukaryotic Cells.Circular RNA profile in gliomas revealed by identification tool UROBORUS Comprehensive identification of internal structure and alternative splicing events in circular RNAs Diverse alternative back-splicing and alternative splicing landscape of circular RNAs PcircRNA_finder: a software for circRNA prediction in plants.Differential Effects of Vitamins A and D on the Transcriptional Landscape of Human Monocytes during Infection.Identification and Functional Characterization of Tomato CircRNAs Derived from Genes Involved in Fruit Pigment Accumulation.Circular RNA: an emerging key player in RNA world.Circular RNA identification based on multiple seed matching.Detecting circular RNAs: bioinformatic and experimental challenges.Cross-regulation by CrcZ RNA controls anoxic biofilm formation in Pseudomonas aeruginosa

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A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection.

http://www.wikidata.org/entity/Q33751476

description

2014 nî lūn-bûn

@nan

2014 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2014 թվականի փետրվարին հրատարակված գիտական հոդված

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2014年の論文

@ja

2014年論文

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2014年論文

@zh-hant

2014年論文

@zh-hk

2014年論文

@zh-mo

2014年論文

@zh-tw

2014年论文

@wuu

name

A multi-split mapping algorith ...... splicing and fusion detection.

@ast

A multi-split mapping algorith ...... splicing and fusion detection.

@en

type

label

A multi-split mapping algorith ...... splicing and fusion detection.

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A multi-split mapping algorith ...... splicing and fusion detection.

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prefLabel

A multi-split mapping algorith ...... splicing and fusion detection.

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A multi-split mapping algorith ...... splicing and fusion detection.

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A multi-split mapping algorith ...... splicing and fusion detection.

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Christian Otto

http://www.w3.org/2001/XMLSchema#string

Gero Doose

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Lesca M Holdt

http://www.w3.org/2001/XMLSchema#string

Manfred Kunz

http://www.w3.org/2001/XMLSchema#string

Sabina Christ

http://www.w3.org/2001/XMLSchema#string

Steve Hoffmann

http://www.w3.org/2001/XMLSchema#string

P2860

Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Fast mapping of short sequences with mismatches, insertions and deletions using index structures

Integrative analysis of the melanoma transcriptome

TopHat: discovering splice junctions with RNA-Seq

BLAT--the BLAST-like alignment tool

Global and unbiased detection of splice junctions from RNA-seq data

TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

Fast gapped-read alignment with Bowtie 2

Landscape of transcription in human cells

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10.1186/GB-2014-15-2-R34

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2

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15

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Peter F. Stadler

Jörg Hackermüller

David Langenberger

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2014-02-10T00:00:00Z

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4056463

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