How sequence defines structure: a crystallographic map of DNA structure and conformation.
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Directing macromolecular conformation through halogen bondsA Rare Nucleotide Base Tautomer in the Structure of an Asymmetric DNA JunctionStructure of d(CCGGGACCGG)4as a four-way junction at 1.6 Å resolution: new insights into solvent interactionsStructure determination of an intercalating ruthenium dipyridophenazine complex which kinks DNA by semiintercalation of a tetraazaphenanthrene ligandStructure of d(CGGGTACCCG)4as a four-way Holliday junctionCrystal structures of Λ-[Ru(phen)₂dppz]²⁺ with oligonucleotides containing TA/TA and AT/AT steps show two intercalation modesProbing the role of sequence in the assembly of three-dimensional DNA crystalsDNA polymorphism in crystals: three stable conformations for the decadeoxynucleotide d(GCATGCATGC)Effect of Hydroxymethylcytosine on the Structure and Stability of Holliday JunctionsProtein/DNA interactions in complex DNA topologies: expect the unexpectedThe Halogen BondStructural Mechanism behind Distinct Efficiency of Oct4/Sox2 Proteins in Differentially Spaced DNA ComplexesIntrinsic flexibility of B-DNA: the experimental TRX scale.Computational reference data for the photochemistry of cyclobutane pyrimidine dimers.High guanine and cytosine content increases mRNA levels in mammalian cellsConstruction of a genome-scale structural map at single-nucleotide resolution.Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifsA systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes.Detailed mechanism for transposition by TnpA transposase involves DNA shape rather than direct protein-DNA recognition to generate an active nucleoprotein complex.Study of single-nucleotide polymorphisms by means of electrical conductance measurementsMolecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.Cheminformatics methods for novel nanopore analysis of HIV DNA terminiProgrammable oligomers targeting 5'-GGGG-3' in the minor groove of DNA and NF-kappaB binding inhibition.Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)₄.The stacked-X DNA Holliday junction and protein recognition.Solution formation of Holliday junctions in inverted-repeat DNA sequencesProgrammable oligomers for minor groove DNA recognitionStructure, dynamics, and branch migration of a DNA Holliday junction: a single-molecule fluorescence and modeling study.The accuracy of quantum chemical methods for large noncovalent complexes.Influence of 8-oxoguanosine on the fine structure of DNA studied with biasing-potential replica exchange simulationsProtein/DNA interactions in complex DNA topologies: expect the unexpected.DNA-directed base pair opening.Relationships between hydrogen bonds and halogen bonds in biological systems.DNA conformations and their sequence preferences.Prokaryotic gene finding based on physicochemical characteristics of codons calculated from molecular dynamics simulations.Optimization of the CHARMM additive force field for DNA: Improved treatment of the BI/BII conformational equilibrium.All-atom polarizable force field for DNA based on the classical Drude oscillator modelHot-spot consensus of fluoroquinolone-mediated DNA cleavage by Gram-negative and Gram-positive type II DNA topoisomerases.The energetic contribution of induced electrostatic asymmetry to DNA bending by a site-specific protein.
P2860
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P2860
How sequence defines structure: a crystallographic map of DNA structure and conformation.
description
2005 nî lūn-bûn
@nan
2005 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
How sequence defines structure: a crystallographic map of DNA structure and conformation.
@ast
How sequence defines structure: a crystallographic map of DNA structure and conformation.
@en
type
label
How sequence defines structure: a crystallographic map of DNA structure and conformation.
@ast
How sequence defines structure: a crystallographic map of DNA structure and conformation.
@en
prefLabel
How sequence defines structure: a crystallographic map of DNA structure and conformation.
@ast
How sequence defines structure: a crystallographic map of DNA structure and conformation.
@en
P2093
P2860
P50
P356
P1476
How sequence defines structure: a crystallographic map of DNA structure and conformation
@en
P2093
Amy Teegarden
Dustin Raup
Emily Cavaliere
Franklin A Hays
Zebulon J R Jones
P2860
P304
P356
10.1073/PNAS.0409455102
P407
P577
2005-05-03T00:00:00Z