Inferring transcription factor complexes from ChIP-seq data.
about
MYRF is a membrane-associated transcription factor that autoproteolytically cleaves to directly activate myelin genesPractical guidelines for the comprehensive analysis of ChIP-seq dataHomotypic clusters of transcription factor binding sites: A model system for understanding the physical mechanics of gene expressionThe role of Transposable Elements in shaping the combinatorial interaction of Transcription FactorsPAtCh-Cap: input strategy for improving analysis of ChIP-exo data sets and beyondCo-motif discovery identifies an Esrrb-Sox2-DNA ternary complex as a mediator of transcriptional differences between mouse embryonic and epiblast stem cellsGenome-wide predictors of NF-κB recruitment and transcriptional activityMuMoD: a Bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP dataDiscover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data setsMotif-based analysis of large nucleotide data sets using MEME-ChIP.Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentRomulus: robust multi-state identification of transcription factor binding sites from DNase-seq data.New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana.Inferring condition-specific targets of human TF-TF complexes using ChIP-seq data.Live-cell monitoring of periodic gene expression in synchronous human cells identifies Forkhead genes involved in cell cycle control.An improved ChIP-seq peak detection system for simultaneously identifying post-translational modified transcription factors by combinatorial fusion, using SUMOylation as an example.A highly efficient and effective motif discovery method for ChIP-seq/ChIP-chip data using positional information.Differential motif enrichment analysis of paired ChIP-seq experimentsHigh resolution genome wide binding event finding and motif discovery reveals transcription factor spatial binding constraintsDe novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasetsJunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis.Flanking sequence context-dependent transcription factor binding in early Drosophila development.Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq dataTACO: a general-purpose tool for predicting cell-type-specific transcription factor dimers.The MEME Suite.A microfluidic device for epigenomic profiling using 100 cells.Retinoic acid receptors recognize the mouse genome through binding elements with diverse spacing and topology.p53-Regulated Networks of Protein, mRNA, miRNA, and lncRNA Expression Revealed by Integrated Pulsed Stable Isotope Labeling With Amino Acids in Cell Culture (pSILAC) and Next Generation Sequencing (NGS) AnalysesInferring direct DNA binding from ChIP-seq.Overlapping ETS and CRE Motifs ((G/C)CGGAAGTGACGTCA) preferentially bound by GABPα and CREB proteinsIntegrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target.Modeling co-occupancy of transcription factors using chromatin featuresNucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome.Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimersWidespread evidence of cooperative DNA binding by transcription factors in Drosophila development.Refinement of the androgen response element based on ChIP-Seq in androgen-insensitive and androgen-responsive prostate cancer cell lines.Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements.Maps of context-dependent putative regulatory regions and genomic signal interactions.Systematic identification of transcriptional regulatory modules from protein-protein interaction networksCCAT: Combinatorial Code Analysis Tool for transcriptional regulation.
P2860
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P2860
Inferring transcription factor complexes from ChIP-seq data.
description
2011 nî lūn-bûn
@nan
2011 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
Inferring transcription factor complexes from ChIP-seq data.
@ast
Inferring transcription factor complexes from ChIP-seq data.
@en
type
label
Inferring transcription factor complexes from ChIP-seq data.
@ast
Inferring transcription factor complexes from ChIP-seq data.
@en
prefLabel
Inferring transcription factor complexes from ChIP-seq data.
@ast
Inferring transcription factor complexes from ChIP-seq data.
@en
P2860
P356
P1476
Inferring transcription factor complexes from ChIP-seq data.
@en
P2093
James Johnson
Tom Whitington
P2860
P356
10.1093/NAR/GKR341
P407
P577
2011-05-20T00:00:00Z