Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome - Test2 - elhamkhani - TriplyDB

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

http://www.wikidata.org/entity/Q34175322

about

The importance of identifying alternative splicing in vertebrate genome annotation Exploring the potential of public proteomics data Whole human genome proteogenomic mapping for ENCODE cell line data: identifying protein-coding regions Multiple evidence strands suggest that there may be as few as 19,000 human protein-coding genes A Golden Age for Working with Public Proteomics Data Making proteomics data accessible and reusable: current state of proteomics databases and repositories Proteogenomics: concepts, applications and computational strategies Identification of rare alternative splicing events in MS/MS data reveals a significant fraction of alternative translation initiation sites.Protein-Coding Genes' Retrocopies and Their Functions.Alternative splicing shapes transcriptome but not proteome diversity in Physcomitrella patens.The discovery of novel protein-coding features in mouse genome based on mass spectrometry data.The Vertebrate Genome Annotation browser 10 years on Unmasking alternative splicing inside protein-coding exons defines exitrons and their role in proteome plasticity.Improving GENCODE reference gene annotation using a high-stringency proteogenomics workflow.Protein analysis by shotgun/bottom-up proteomics Pseudogene-derived lncRNAs: emerging regulators of gene expression.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.Quantitative profiling of peptides from RNAs classified as noncoding.Alternatively Spliced Homologous Exons Have Ancient Origins and Are Highly Expressed at the Protein Level.Genomic copy number variation in Mus musculus CovRS-Regulated Transcriptome Analysis of a Hypervirulent M23 Strain of Group A Streptococcus pyogenes Provides New Insights into Virulence Determinants.A note on the false discovery rate of novel peptides in proteogenomics.Creating reference gene annotation for the mouse C57BL6/J genome assembly.Comparative proteomics reveals a significant bias toward alternative protein isoforms with conserved structure and function.LncRNA BCAR4 wires up signaling transduction in breast cancer.A tool for integrating genetic and mass spectrometry-based peptide data: Proteogenomics Viewer: PV: A genome browser-like tool, which includes MS data visualization and peptide identification parameters.APPRIS: annotation of principal and alternative splice isoforms.Devising a Consensus Framework for Validation of Novel Human Coding Loci.Discovery and mass spectrometric analysis of novel splice-junction peptides using RNA-Seq Proteogenomics: Integrating Next-Generation Sequencing and Mass Spectrometry to Characterize Human Proteomic Variation Functional transcriptomics in the post-ENCODE era Genotype to phenotype via network analysis.Mediators of induced pluripotency and their role in cancer cells - current scientific knowledge and future perspectives.Regulatory Roles for Long ncRNA and mRNA The proteome under translational control.Forty-four novel protein-coding loci discovered using a proteomics informed by transcriptomics (PIT) approach in rat male germ cells.Integrated Transcriptomic-Proteomic Analysis Using a Proteogenomic Workflow Refines Rat Genome Annotation Impact of Alternative Splicing on the Human Proteome.Proteogenomics from a bioinformatics angle: A growing field.Proteogenomic studies on cancer drug resistance: towards biomarker discovery and target identification.

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Shotgun proteomics aids discovery of novel protein-coding genes, alternative splicing, and "resurrected" pseudogenes in the mouse genome

http://www.wikidata.org/entity/Q34175322

description

2011 nî lūn-bûn

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2011 թուականի Ապրիլին հրատարակուած գիտական յօդուած

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2011 թվականի ապրիլին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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name

Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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type

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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Genome Research

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Shotgun proteomics aids discov ...... seudogenes in the mouse genome

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David J Adams

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Lu Yu

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Markus Brosch

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Ruth Verstraten

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Initial sequencing and analysis of the human genome

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

Lineage-specific biology revealed by a finished genome assembly of the mouse

EGASP: the human ENCODE Genome Annotation Assessment Project

Retrocopy contributions to the evolution of the human genome

The distributed annotation system

Pseudogenes in the ENCODE regions: consensus annotation, analysis of transcription, and evolution

Fewer Genes, More Noncoding RNA

Novel human glutamate dehydrogenase expressed in neural and testicular tissues and encoded by an X-linked intronless gene

The Ensembl genome database project

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50989006

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3083093

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