Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs. - Test2 - elhamkhani - TriplyDB

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

http://www.wikidata.org/entity/Q34803039

about

Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data MicroRNA Target Recognition: Insights from Transcriptome-Wide Non-Canonical Interactions Argonaute and Argonaute-Bound Small RNAs in Stem Cells Tiny giants of gene regulation: experimental strategies for microRNA functional studies RNA-Binding Proteins in the Regulation of miRNA Activity: A Focus on Neuronal Functions The role of miRNAs in regulating gene expression networks MicroRNA-target interactions: new insights from genome-wide approaches The panorama of miRNA-mediated mechanisms in mammalian cells Progress and challenge of microRNA research in immunity The miR-17/92 cluster: a comprehensive update on its genomics, genetics, functions and increasingly important and numerous roles in health and disease Proteomic approaches and identification of novel therapeutic targets for alcoholism Identification of RNA-protein interaction networks using PAR-CLIP Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells Genome-wide impact of a recently expanded microRNA cluster in mouse A latent pro-survival function for the mir-290-295 cluster in mouse embryonic stem cells Profiling of T helper cell-derived small RNAs reveals unique antisense transcripts and differential association of miRNAs with argonaute proteins 1 and 2 Evolution of the miR-290-295/miR-371-373 cluster family seed repertoire Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs Meta-analysis of tRNA derived RNA fragments reveals that they are evolutionarily conserved and associate with AGO proteins to recognize specific RNA targets.Organic small hairpin RNAs (OshR): a do-it-yourself platform for transgene-based gene silencing.Site identification in high-throughput RNA-protein interaction data A model-based approach to identify binding sites in CLIP-Seq data.Assessing Computational Steps for CLIP-Seq Data Analysis.MicroRNA regulation of innate immune responses in epithelial cells Argonaute proteins regulate HIV-1 multiply spliced RNA and viral production in a Dicer independent manner Smaug: an unexpected journey into the mechanisms of post-transcriptional regulation.Identification of miRNomes associated with adult neurogenesis after stroke using Argonaute 2-based RNA sequencing Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs dCLIP: a computational approach for comparative CLIP-seq analyses.Genome-wide profiling and differential expression of microRNA in rat pluripotent stem cells.New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing.Quantitative Proteomics Analysis Reveals Novel Targets of miR-21 in Zebrafish Embryos WIG1 is crucial for AGO2-mediated ACOT7 mRNA silencing via miRNA-dependent and -independent mechanisms Dicer-microRNA-Myc circuit promotes transcription of hundreds of long noncoding RNAs.Transcriptome-wide discovery of microRNA binding sites in human brain.Embryonic stem cell-specific microRNAs contribute to pluripotency by inhibiting regulators of multiple differentiation pathways Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.Exploring the miRNA regulatory network using evolutionary correlations.Let-7 represses Nr6a1 and a mid-gestation developmental program in adult fibroblasts.

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Genome-wide identification of Ago2 binding sites from mouse embryonic stem cells with and without mature microRNAs.

http://www.wikidata.org/entity/Q34803039

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2011 nî lūn-bûn

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2011年の論文

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Nature Structural & Molecular Biology

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Amanda G Young

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Andrew D Bosson

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Anthony K L Leung

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Arjun Bhutkar

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Cydney B Nielsen

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P2860

Principles of microRNA-target recognition

Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells

ATP-dependent human RISC assembly pathways

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Substrate requirements for let-7 function in the developing zebrafish embryo

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing

MicroRNAs: target recognition and regulatory functions

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

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10.1038/NSMB.1991

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2

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18

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1000690952

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3078052

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