Multidimensional annotation of the Escherichia coli K-12 genome. - Test2 - elhamkhani - TriplyDB

Multidimensional annotation of the Escherichia coli K-12 genome.

Multidimensional annotation of the Escherichia coli K-12 genome.

http://www.wikidata.org/entity/Q36360689

about

Annotation error in public databases: misannotation of molecular function in enzyme superfamilies A protocol for generating a high-quality genome-scale metabolic reconstruction Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology.The incoherent feed-forward loop can generate non-monotonic input functions for genes Elucidation of primary metabolic pathways in Aspergillus species: orphaned research in characterizing orphan genes.Identifying cognate binding pairs among a large set of paralogs: the case of PE/PPE proteins of Mycobacterium tuberculosis Genetic architecture of intrinsic antibiotic susceptibility High-throughput phenotypic characterization of Pseudomonas aeruginosa membrane transport genes The Escherichia coli phosphotyrosine proteome relates to core pathways and virulence Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach What we can learn about Escherichia coli through application of Gene Ontology Metabolic engineering of Escherichia coli for efficient conversion of glycerol to ethanol Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli Reconstruction of biochemical networks in microorganisms Exploring the structure and function paradigm.LeishCyc: a biochemical pathways database for Leishmania major.In vivo application of photocleavable protein interaction reporter technology.Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling.Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: focus on point miscalls and artefactual expansions Network evaluation from the consistency of the graph structure with the measured data.The National Center for Biotechnology Information's Protein Clusters Database.Matching curated genome databases: a non trivial task.Gene set analyses for interpreting microarray experiments on prokaryotic organisms.Genome-scale models of bacterial metabolism: reconstruction and applications.In silico prioritisation of candidate genes for prokaryotic gene function discovery: an application of phylogenetic profiles.Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933 E Unibus Plurum: genomic analysis of an experimentally evolved polymorphism in Escherichia coli.A geographically-diverse collection of 418 human gut microbiome pathway genome databases.eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains.Representing ontogeny through ontology: a developmental biologist's guide to the gene ontology Genomic and transcriptomic landscape of Escherichia coli BL21(DE3)Analog regulation of metabolic demand.Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR Deletion of genes encoding cytochrome oxidases and quinol monooxygenase blocks the aerobic-anaerobic shift in Escherichia coli K-12 MG1655.Dynamics of genome evolution in facultative symbionts of aphids EcoCyc: fusing model organism databases with systems biology.The EcoCyc Database.Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors Dead end metabolites--defining the known unknowns of the E. coli metabolic network Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti.

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Multidimensional annotation of the Escherichia coli K-12 genome.

http://www.wikidata.org/entity/Q36360689

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2007 nî lūn-bûn

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2007年學術文章

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2007年學術文章

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name

Multidimensional annotation of the Escherichia coli K-12 genome.

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Multidimensional annotation of the Escherichia coli K-12 genome.

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type

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Multidimensional annotation of the Escherichia coli K-12 genome.

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Multidimensional annotation of the Escherichia coli K-12 genome.

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Multidimensional annotation of the Escherichia coli K-12 genome.

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Multidimensional annotation of the Escherichia coli K-12 genome.

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Nucleic Acids Research

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Multidimensional annotation of the Escherichia coli K-12 genome.

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Alexander Shearer

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César Bonavides-Martinez

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Ingrid M Keseler

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John Ingraham

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Mario Latendresse

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Markus Krummenacker

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Mónica I Peñaloza-Spínola

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Socorro Gama-Castro

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Suzanne M Paley

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P2860

Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

EcoGene: a genome sequence database for Escherichia coli K-12.

From genomics to chemical genomics: new developments in KEGG

The Universal Protein Resource (UniProt): an expanding universe of protein information.

The EcoCyc Database

An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs

The generic genome browser: a building block for a model organism system database

A novel method for accurate operon predictions in all sequenced prokaryotes

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10.1093/NAR/GKM740

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22

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Julio Collado-Vides

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Escherichia coli

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