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Origin and evolution of the peroxisomal proteome.Toward Automatic Reconstruction of a Highly Resolved Tree of LifeThe genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tractSTRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a geneThe yeast coexpression network has a small-world, scale-free architecture and can be explained by a simple modelSTRING: known and predicted protein-protein associations, integrated and transferred across organismsOrthology prediction at scalable resolution by phylogenetic tree analysisSTRING 7--recent developments in the integration and prediction of protein interactionsSTRING: a database of predicted functional associations between proteinsCorrelation between sequence conservation and the genomic context after gene duplication.Correlation between sequence conservation and the genomic context after gene duplicationA global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation.The R-spondin protein familyDistinctive expansion of potential virulence genes in the genome of the oomycete fish pathogen Saprolegnia parasiticaA TPR domain–containing N-terminal module of MPS1 is required for its kinetochore localization by Aurora BCohesive versus flexible evolution of functional modules in eukaryotesThe phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcriptsEvolution of the Ras-like small GTPases and their regulatorsSignature genes as a phylogenomic toolConservation of gene order: a fingerprint of proteins that physically interactGenome phylogeny based on gene contentEvolutionary acquisition of cysteines determines FOXO paralog-specific redox signaling.Comparative genomics for reliable protein-function prediction from genomic data.Combining data from genomes, Y2H and 3D structure indicates that BolA is a reductase interacting with a glutaredoxin.Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties.SOMBRERO, BEARSKIN1, and BEARSKIN2 regulate root cap maturation in Arabidopsis.Arabidopsis PLETHORA transcription factors control phyllotaxis.Protein complex evolution does not involve extensive network rewiring.Complex fate of paralogs.Enrichment of homologs in insignificant BLAST hits by co-complex network alignment.In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labelingTyrosine phosphorylation profiling in FGF-2 stimulated human embryonic stem cells.Deciphering the evolution and metabolism of an anammox bacterium from a community genome.Evaluating experimental bias and completeness in comparative phosphoproteomics analysis.The identification of functional modules from the genomic association of genesGene context conservation of a higher order than operons.Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age.Pathway alignment: application to the comparative analysis of glycolytic enzymes.Bioinformatic inference of specific and general transcription factor binding sites in the plant pathogen Phytophthora infestansA predicted functional gene network for the plant pathogen Phytophthora infestans as a framework for genomic biology
P50
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P50
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P1006
P214
P1006
P1053
B-8886-2011
P106
P1960
XwAaptMAAAAJ
P21
P214
P2381
P2456
P31
P3829
P496
0000-0002-5804-8547
P734
P7449
PRS1297579
P7859
viaf-285079540