Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language - Wikidata - wikimedia - TriplyDB

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language

http://www.wikidata.org/entity/Q21202776

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language Logical Modeling and Dynamical Analysis of Cellular Networks Promoting Coordinated Development of Community-Based Information Standards for Modeling in Biology: The COMBINE Initiative Chaste: an open source C++ library for computational physiology and biology.SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools Quantitative and logic modelling of molecular and gene networks GESDB: a platform of simulation resources for genetic epidemiology studies The Cardiac Electrophysiology Web Lab SEEK: a systems biology data and model management platform COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project Combining computational models, semantic annotations and simulation experiments in a graph database WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)JSBML 1.0: providing a smorgasbord of options to encode systems biology models.OpenCOR: a modular and interoperable approach to computational biology.MONALISA for stochastic simulations of Petri net models of biochemical systems.Biological Dynamics Markup Language (BDML): an open format for representing quantitative biological dynamics data.Using physiologically based models for clinical translation: predictive modelling, data interpretation or something in-between?Toward Community Standards and Software for Whole-Cell Modeling LEMS: a language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2.Programming biological models in Python using PySB Multiscale modeling and data integration in the virtual physiological rat project.LibKiSAO: a Java library for Querying KiSAO.Improving collaboration by standardization efforts in systems biology.The systems biology simulation core algorithm Using CellML with OpenCMISS to Simulate Multi-Scale Physiology Ligand-dependent opening of the multiple AMPA receptor conductance states: a concerted model Meeting report from the first meetings of the Computational Modeling in Biology Network (COMBINE).The role of markup for enabling interoperability in health informatics.Automatising the analysis of stochastic biochemical time-series.Regulation of ERK-MAPK signaling in human epidermis An algorithm to detect and communicate the differences in computational models describing biological systems.JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations.Databases for multilevel biophysiology research available at Physiome.jp.Modular modelling with Physiome standards.Where next for the reproducibility agenda in computational biology?Evolutionary trends and functional anatomy of the human expanded autophagy network.NeuroManager: a workflow analysis based simulation management engine for computational neuroscience.phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos

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Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language

http://www.wikidata.org/entity/Q21202776

description

2011 nî lūn-bûn

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2011 թուականին հրատարակուած գիտական յօդուած

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2011 թվականին հրատարակված գիտական հոդված

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2011年の論文

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Minimum Information About a Simulation Experiment (MIASE)

NeuroML: a language for describing data driven models of neurons and networks with a high degree of biological detail

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Systematic integration of experimental data and models in systems biology

BioCatalogue: a universal catalogue of web services for the life sciences

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

Controlled vocabularies and semantics in systems biology

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project

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