eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations - Wikidata - wikimedia - TriplyDB

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

http://www.wikidata.org/entity/Q24644077

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Metagenomics - a guide from sampling to data analysis Metagenomic analysis reveals a functional signature for biomass degradation by cecal microbiota in the leaf-eating flying squirrel (Petaurista alborufus lena)Assessment of metagenomic assembly using simulated next generation sequencing data Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing SmashCommunity: a metagenomic annotation and analysis tool Enterotypes of the human gut microbiome A framework for human microbiome research The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011 OMA 2011: orthology inference among 1000 complete genomes Effective--a database of predicted secreted bacterial proteins PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions Network of Cancer Genes (NCG 3.0): integration and analysis of genetic and network properties of cancer genes eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges MOPED: Model Organism Protein Expression Database Orthology prediction methods: a quality assessment using curated protein families Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees Distinct protein classes in human red cell proteome revealed by similarity of phylogenetic profiles Characterization of Microbial Mat Microbiomes in the Modern Thrombolite Ecosystem of Lake Clifton, Western Australia Using Shotgun Metagenomics.A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes Consistent mutational paths predict eukaryotic thermostability A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles Evolution of biological interaction networks: from models to real data Searching the protein structure database for ligand-binding site similarities using CPASS v.2 Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs eggNOG v4.0: nested orthology inference across 3686 organisms Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results Evolutionary force in confamiliar marine vertebrates of different temperature realms: adaptive trends in zoarcid fish transcriptomes Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions.Predicted Relative Metabolomic Turnover (PRMT): determining metabolic turnover from a coastal marine metagenomic dataset.Protein function prediction by massive integration of evolutionary analyses and multiple data sources.An Effective Big Data Supervised Imbalanced Classification Approach for Ortholog Detection in Related Yeast Species Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone.Think globally and solve locally: secondary memory-based network learning for automated multi-species function prediction CRISPR-Cas systems target a diverse collection of invasive mobile genetic elements in human microbiomes.Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels Workflow and web application for annotating NCBI BioProject transcriptome data.OrthoInspector: comprehensive orthology analysis and visual exploration.Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.Deep Illumina-based shotgun sequencing reveals dietary effects on the structure and function of the fecal microbiome of growing kittens.

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eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations

http://www.wikidata.org/entity/Q24644077

description

2010 nî lūn-bûn

@nan

2010 թուականի Յունուարին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի հունվարին հրատարակված գիտական հոդված

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2010年の論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年論文

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2010年论文

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name

eggNOG v2.0: extending the evo ...... ies and functional annotations

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eggNOG v2.0: extending the evo ...... ies and functional annotations

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eggNOG v2.0: extending the evo ...... ies and functional annotations

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eggNOG v2.0: extending the evo ...... ies and functional annotations

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eggNOG v2.0: extending the evo ...... ies and functional annotations

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eggNOG v2.0: extending the evo ...... ies and functional annotations

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Nucleic Acids Research

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eggNOG v2.0: extending the evo ...... ies and functional annotations

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A Roth

http://www.w3.org/2001/XMLSchema#string

D Szklarczyk

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M Kuhn

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P Julien

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The COG database: an updated version includes eukaryotes

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

MUSCLE: multiple sequence alignment with high accuracy and high throughput

EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates

The Pfam protein families database

OrthoDB: the hierarchical catalog of eukaryotic orthologs

KEGG for linking genomes to life and the environment

PhylomeDB: a database for genome-wide collections of gene phylogenies

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

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D190-5

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1978986

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10.1093/NAR/GKP951

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Database issue

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38

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Lars Juhl Jensen

Christian von Mering

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2009-11-09T00:00:00Z

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220580653

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19900971

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2808932

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