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Alternate states of proteins revealed by detailed energy landscape mapping

Alternate states of proteins revealed by detailed energy landscape mapping

http://www.wikidata.org/entity/Q30396213

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Doing molecular biophysics: finding, naming, and picturing signal within complexity A smoothed backbone-dependent rotamer library for proteins derived from adaptive kernel density estimates and regressions Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples From Mollusks to Medicine: A Venomics Approach for the Discovery and Characterization of Therapeutics from Terebridae Peptide Toxins Assembly of the MHC I peptide-loading complex determined by a conserved ionic lock-switch.An Integrated Framework Advancing Membrane Protein Modeling and Design Structure of the BamC Two-Domain Protein Obtained by Rosetta with a Limited NMR Data Set Principles for designing ideal protein structures Structure of the basal components of a bacterial transporter Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR Identifying and Visualizing Macromolecular Flexibility in Structural Biology Structural model of the dimeric Parkinson's protein LRRK2 reveals a compact architecture involving distant interdomain contacts RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite Computational protein design quantifies structural constraints on amino acid covariation Flexible backbone sampling methods to model and design protein alternative conformations Scientific benchmarks for guiding macromolecular energy function improvement Relative Orientation of POTRA Domains from Cyanobacterial Omp85 Studied by Pulsed EPR Spectroscopy.One contact for every twelve residues allows robust and accurate topology-level protein structure modeling Advances in Rosetta structure prediction for difficult molecular-replacement problems.Improving fragment quality for de novo structure prediction.Computational de novo design of a four-helix bundle protein--DND_4HB.The origin of consistent protein structure refinement from structural averaging.Residue-level global and local ensemble-ensemble comparisons of protein domains.Computed structures of point deletion mutants and their enzymatic activities.Assessment of protein structure refinement in CASP9.Error-estimation-guided rebuilding of de novo models increases the success rate of ab initio phasing.Predicting Homogeneous Pilus Structure from Monomeric Data and Sparse Constraints.Expanding the proteome: disordered and alternatively folded proteins.A Pareto-optimal refinement method for protein design scaffolds Determination of the structures of symmetric protein oligomers from NMR chemical shifts and residual dipolar couplings.Replica exchange improves sampling in low-resolution docking stage of RosettaDock.Tarantula toxins use common surfaces for interacting with Kv and ASIC ion channels.Robust classification of protein variation using structural modelling and large-scale data integration.Charge-Disproportionation Symmetry Breaking Creates a Heterodimeric Myoglobin Complex with Enhanced Affinity and Rapid Intracomplex Electron Transfer.Control over overall shape and size in de novo designed proteins Potent antiviral agents fail to elicit genetically-stable resistance mutations in either enterovirus 71 or Coxsackievirus A16.Peptide crystal simulations reveal hidden dynamics Computational models of protein kinematics and dynamics: beyond simulation.Structure of the human 26S proteasome at a resolution of 3.9 Å.Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers

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P2860

Alternate states of proteins revealed by detailed energy landscape mapping

http://www.wikidata.org/entity/Q30396213

description

2010 nî lūn-bûn

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2010 թուականի Նոյեմբերին հրատարակուած գիտական յօդուած

@hyw

2010 թվականի նոյեմբերին հրատարակված գիտական հոդված

@hy

2010年の論文

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2010年論文

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2010年論文

@zh-hant

2010年論文

@zh-hk

2010年論文

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2010年論文

@zh-tw

2010年论文

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name

Alternate states of proteins revealed by detailed energy landscape mapping

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Alternate states of proteins revealed by detailed energy landscape mapping

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type

label

Alternate states of proteins revealed by detailed energy landscape mapping

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Alternate states of proteins revealed by detailed energy landscape mapping

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Alternate states of proteins revealed by detailed energy landscape mapping

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Alternate states of proteins revealed by detailed energy landscape mapping

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J.JMB.2010.11.008

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Journal of Molecular Biology

P1476

Alternate states of proteins revealed by detailed energy landscape mapping

@en

P2093

Frank Dimaio

http://www.w3.org/2001/XMLSchema#string

Michael D Tyka

http://www.w3.org/2001/XMLSchema#string

Yifan Song

http://www.w3.org/2001/XMLSchema#string

P2860

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

The other 90% of the protein: assessment beyond the Calphas for CASP8 template-based and high-accuracy models.

De novo computational design of retro-aldol enzymes

High-resolution structure prediction and the crystallographic phase problem

MolProbity: all-atom structure validation for macromolecular crystallography

Consistent blind protein structure generation from NMR chemical shift data

The MUMO (minimal under-restraining minimal over-restraining) method for the determination of native state ensembles of proteins

Ensemble Refinement of Protein Crystal Structures: Validation and Application

Open-to-closed transition in apo maltose-binding protein observed by paramagnetic NMR

Kemp elimination catalysts by computational enzyme design

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607-618

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scholarly article

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10.1016/J.JMB.2010.11.008

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2

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David C. Richardson

Daniel A. Keedy

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2010-11-10T00:00:00Z

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47789311

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21073878

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3046547

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