Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies
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Extensive HIV-1 intra-host recombination is common in tissues with abnormal histopathologyPhyloTempo: A Set of R Scripts for Assessing and Visualizing Temporal Clustering in Genealogies Inferred from Serially Sampled Viral SequencesPhylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants.Understanding the HIV coreceptor switch from a dynamical perspective.Distinct patterns of HIV-1 evolution within metastatic tissues in patients with non-Hodgkins lymphomaError correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.Avian influenza virus, Streptococcus suis serotype 2, severe acute respiratory syndrome-coronavirus and beyond: molecular epidemiology, ecology and the situation in China.HIV-1 activates macrophages independent of Toll-like receptors.Different tempo and anatomic location of dual-tropic and X4 virus emergence in a model of R5 simian-human immunodeficiency virus infection.Evolution of the HIV-1 env gene in the Rag2-/- gammaC-/- humanized mouse modelDetecting consistent patterns of directional adaptation using differential selection codon models.West Nile virus genetic diversity is maintained during transmission by Culex pipiens quinquefasciatus mosquitoesHIV-1 phylogenetic analysis shows HIV-1 transits through the meninges to brain and peripheral tissues.Extreme genetic divergence is required for coreceptor switching in HIV-1 subtype C.Spatiotemporal dynamics of simian immunodeficiency virus brain infection in CD8+ lymphocyte-depleted rhesus macaques with neuroAIDS.Distribution of HIV-1 infection in different T lymphocyte subsets: antiretroviral therapy-naïve vs. experienced patients.The evolution of HIV: inferences using phylogenetics.Toward a quantitative understanding of viral phylogeography.Tracking the Emergence of Host-Specific Simian Immunodeficiency Virus env and nef Populations Reveals nef Early Adaptation and Convergent Evolution in Brain of Naturally Progressing Rhesus Macaques.Developmental regulation of P-glycoprotein activity within thymocytes results in increased anti-HIV protease inhibitor activity.High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems.R5X4 viruses are evolutionary, functional, and antigenic intermediates in the pathway of a simian-human immunodeficiency virus coreceptor switchThe meningeal lymphatic system: a route for HIV brain migration?How HIV changes its tropism: evolution and adaptation?The intra-host evolutionary and population dynamics of human immunodeficiency virus type 1: a phylogenetic perspective.The Pace of Co-receptor Tropism Switch in HIV-1 Infected Individuals after Recent Infection.Dectin-1/TLR2 and NOD2 agonists render dendritic cells susceptible to infection by X4-using HIV-1 and promote cis-infection of CD4(+) T cells.Female genital tract shedding of CXCR4-tropic HIV Type 1 is associated with a majority population of CXCR4-tropic HIV Type 1 in blood and declining CD4(+) cell counts.Combination of immune and viral factors distinguishes low-risk versus high-risk HIV-1 disease progression in HLA-B*5701 subjects.Insights into the Impact of CD8+ Immune Modulation on Human Immunodeficiency Virus Evolutionary Dynamics in Distinct Anatomical Compartments by Using Simian Immunodeficiency Virus-Infected Macaque Models of AIDS Progression.Dynamic features of the selective pressure on the human immunodeficiency virus type 1 (HIV-1) gp120 CD4-binding site in a group of long term non progressor (LTNP) subjects.Fitness valleys constrain HIV-1's adaptation to its secondary chemokine coreceptor.Major coexisting human immunodeficiency virus type 1 env gene subpopulations in the peripheral blood are produced by cells with similar turnover rates and show little evidence of genetic compartmentalization.A novel methodology for large-scale phylogeny partition.Genetic diversity and molecular epidemiology of HIV transmission
P2860
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P2860
Phylodynamics of HIV-1 in lymphoid and non-lymphoid tissues reveals a central role for the thymus in emergence of CXCR4-using quasispecies
description
2007 nî lūn-bûn
@nan
2007 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2007 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
name
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@ast
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@en
type
label
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@ast
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@en
prefLabel
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@ast
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@en
P2093
P2860
P1433
P1476
Phylodynamics of HIV-1 in lymp ...... ce of CXCR4-using quasispecies
@en
P2093
Brant R Burkhardt
Guity Ghaffari
John W Sleasman
Marco Salemi
Maureen M Goodenow
Rebecca R Gray
P2860
P356
10.1371/JOURNAL.PONE.0000950
P407
P577
2007-09-26T00:00:00Z