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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

http://www.wikidata.org/entity/Q33439384

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WebMGA: a customizable web server for fast metagenomic sequence analysis Removing noise from pyrosequenced amplicons Considerations For Optimizing Microbiome Analysis Using a Marker Gene Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach Resilience and receptivity worked in tandem to sustain a geothermal mat community amidst erratic environmental conditions Airborne bacterial populations above desert soils of the McMurdo Dry Valleys, Antarctica Sequencing our way towards understanding global eukaryotic biodiversity Robust computational analysis of rRNA hypervariable tag datasets Implications of pyrosequencing error correction for biological data interpretation Denoising PCR-amplified metagenome data.Analysis of metagenomic data containing high biodiversity levels.Assessing the consequences of denoising marker-based metagenomic data.Benthic microbial communities of coastal terrestrial and ice shelf Antarctic meltwater ponds Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae.Ribosomal Database Project: data and tools for high throughput rRNA analysis.Metagenomics: tools and insights for analyzing next-generation sequencing data derived from biodiversity studies.CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment DADA2: High-resolution sample inference from Illumina amplicon data.MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence.A high-throughput DNA sequence aligner for microbial ecology studies Ironing out the wrinkles in the rare biosphere through improved OTU clustering VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences.The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies.Advanced computational algorithms for microbial community analysis using massive 16S rRNA sequence data Second-generation environmental sequencing unmasks marine metazoan biodiversity.The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation.From reads to operational taxonomic units: an ensemble processing pipeline for MiSeq amplicon sequencing data A greedy alignment-free distance estimator for phylogenetic inference.Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions.PhylOTU: a high-throughput procedure quantifies microbial community diversity and resolves novel taxa from metagenomic data.A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis.jMOTU and Taxonerator: turning DNA Barcode sequences into annotated operational taxonomic units Diversity of bacteria at healthy human conjunctiva.Integrative Profiling of Bee Communities from Habitats of Tropical Southern Yunnan (China).Unraveling the stratification of an iron-oxidizing microbial mat by metatranscriptomics.Regime shift in sandy beach microbial communities following Deepwater Horizon oil spill remediation efforts.Fecal microbiota in premature infants prior to necrotizing enterocolitis.Metagenomics: Facts and Artifacts, and Computational Challenges*Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.Molecular study of worldwide distribution and diversity of soil animals

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

http://www.wikidata.org/entity/Q33439384

description

2009 nî lūn-bûn

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2009 թուականի Մայիսին հրատարակուած գիտական յօդուած

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2009 թվականի մայիսին հրատարակված գիտական հոդված

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2009年の論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年論文

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2009年论文

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences.

@en

P2093

Fahong Yu

http://www.w3.org/2001/XMLSchema#string

Li Liu

http://www.w3.org/2001/XMLSchema#string

Michael L Farrell

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William Farmerie

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William McKendree

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Yijun Sun

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Yunpeng Cai

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P2860

Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

Genome sequencing in microfabricated high-density picolitre reactors

MAFFT version 5: improvement in accuracy of multiple sequence alignment

MUSCLE: multiple sequence alignment with high accuracy and high throughput

Pyrosequencing enumerates and contrasts soil microbial diversity

Microbial diversity in the deep sea and the underexplored "rare biosphere"

FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries

A general method applicable to the search for similarities in the amino acid sequence of two proteins

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness.

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10.1093/NAR/GKP285

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19417062

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2691849

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