NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure. - Wikidata - wikimedia - TriplyDB

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.

http://www.wikidata.org/entity/Q33600780

about

The 3' splice site of influenza A segment 7 mRNA can exist in two conformations: a pseudoknot and a hairpin Genome-wide analyses of Epstein-Barr virus reveal conserved RNA structures and a novel stable intronic sequence RNA IFNL3 mRNA structure is remodeled by a functional non-coding polymorphism associated with hepatitis C virus clearance ViennaRNA Package 2.0 A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotide distribution Multilign: an algorithm to predict secondary structures conserved in multiple RNA sequences Single-Molecule Imaging Reveals that Argonaute Reshapes the Binding Properties of Its Nucleic Acid Guides The DEAD-box protein Dbp2 functions with the RNA-binding protein Yra1 to promote mRNP assembly.Integrating chemical footprinting data into RNA secondary structure prediction A parallel implementation of the Wuchty algorithm with additional experimental filters to more thoroughly explore RNA conformational space Rich RNA Structure Landscapes Revealed by Mutate-and-Map Analysis Self-Folding of Naked Segment 8 Genomic RNA of Influenza A Virus Network Properties of the Ensemble of RNA Structures Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures Fast, approximate kinetics of RNA folding Complete RNA inverse folding: computational design of functional hammerhead ribozymes Using structural and evolutionary information to detect and correct pyrosequencing errors in noncoding RNAs Global or local? Predicting secondary structure and accessibility in mRNAs Thermodynamic characterization of the Saccharomyces cerevisiae telomerase RNA pseudoknot domain in vitro Differences between cotranscriptional and free riboswitch folding Mechanistic insights into temperature-dependent regulation of the simple cyanobacterial hsp17 RNA thermometer at base-pair resolution.Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data Analysis of sequencing data for probing RNA secondary structures and protein-RNA binding in studying posttranscriptional regulations.Molecular detection of a novel totivirus from golden shiner (Notemigonus crysoleucas) baitfish in the USA.Evolutionary Algorithm for RNA Secondary Structure Prediction Based on Simulated SHAPE Data.Regulation of Isoflavone Biosynthesis by miRNAs in Two Contrasting Soybean Genotypes at Different Seed Developmental Stages.In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper Sox9b Expression.A sensitivity analysis of RNA folding nearest neighbor parameters identifies a subset of free energy parameters with the greatest impact on RNA secondary structure prediction.From structure prediction to genomic screens for novel non-coding RNAs.Enhanced product stability in the hammerhead ribozyme.RNAiFold2T: Constraint Programming design of thermo-IRES switches.Secondary structure of a conserved domain in an intron of influenza A M1 mRNA SHAPE-directed RNA secondary structure prediction.MELTING, a flexible platform to predict the melting temperatures of nucleic acids GTfold: enabling parallel RNA secondary structure prediction on multi-core desktops Mathematical tools to optimize the design of oligonucleotide probes and primers.RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules.IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions.Self-assembling RNA nanorings based on RNAI/II inverse kissing complexes.Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble.

P2860

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P2860

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.

http://www.wikidata.org/entity/Q33600780

description

2009 nî lūn-bûn

@nan

2009 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած

@hyw

2009 թվականի հոտեմբերին հրատարակված գիտական հոդված

@hy

2009年の論文

@ja

2009年論文

@yue

2009年論文

@zh-hant

2009年論文

@zh-hk

2009年論文

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2009年論文

@zh-tw

2009年论文

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name

NNDB: the nearest neighbor par ...... leic acid secondary structure.

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NNDB: the nearest neighbor par ...... leic acid secondary structure.

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NNDB: the nearest neighbor par ...... leic acid secondary structure.

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NNDB: the nearest neighbor par ...... leic acid secondary structure.

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P1433

Nucleic Acids Research

P1476

NNDB: the nearest neighbor par ...... leic acid secondary structure.

@en

P2093

David H Mathews

http://www.w3.org/2001/XMLSchema#string

P2860

Mfold web server for nucleic acid folding and hybridization prediction

Sfold web server for statistical folding and rational design of nucleic acids

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

CONTRAfold: RNA secondary structure prediction without physics-based models

The thermodynamics of DNA structural motifs

Improved estimation of secondary structure in ribonucleic acids

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

RNAsoft: A suite of RNA secondary structure prediction and design software tools.

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D280-2

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scholarly article

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10.1093/NAR/GKP892

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Database issue

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38

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Douglas H. Turner

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2009-10-30T00:00:00Z

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38058637

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19880381

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nearest neighbour algorithm

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2808915

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