Benchmarking and analysis of protein docking performance in Rosetta v3.2. - Wikidata - wikimedia - TriplyDB

Benchmarking and analysis of protein docking performance in Rosetta v3.2.

Benchmarking and analysis of protein docking performance in Rosetta v3.2.

http://www.wikidata.org/entity/Q33988409

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Sequence co-evolution gives 3D contacts and structures of protein complexes Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics An Integrated Framework Advancing Membrane Protein Modeling and Design Leishmania major Peroxidase Is a Cytochrome c Peroxidase Crystal structure of the FRP and identification of the active site for modulation of OCP-mediated photoprotection in cyanobacteria Human antibodies that neutralize respiratory droplet transmissible H5N1 influenza viruses Binding of MgtR, a Salmonella Transmembrane Regulatory Peptide, to MgtC, a Mycobacterium tuberculosis Virulence Factor: A Structural Study Crystal structure of the nucleotide-binding domain of mortalin, the mitochondrial Hsp70 chaperone Structural Analysis of Replication Protein A Recruitment of the DNA Damage Response Protein SMARCAL1 Computational Design of Hypothetical New Peptides Based on a Cyclotide Scaffold as HIV gp120 Inhibitor Binding interface between the Salmonella σ(S)/RpoS subunit of RNA polymerase and Crl: hints from bacterial species lacking crl Serverification of molecular modeling applications: the Rosetta Online Server that Includes Everyone (ROSIE)Archaeal actin from a hyperthermophile forms a single-stranded filament Optimizing scoring function of protein-nucleic acid interactions with both affinity and specificity.Functional loss of semaphorin 3C and/or semaphorin 3D and their epistatic interaction with ret are critical to Hirschsprung disease liability Large-scale determination of previously unsolved protein structures using evolutionary information Predicting Homogeneous Pilus Structure from Monomeric Data and Sparse Constraints.Structure of the Neisseria Adhesin Complex Protein (ACP) and its role as a novel lysozyme inhibitor.Modeling Hsp70/Hsp40 interaction by multi-scale molecular simulations and coevolutionary sequence analysis Delineating the functional map of the interaction between nimotuzumab and the epidermal growth factor receptor.Replica exchange improves sampling in low-resolution docking stage of RosettaDock.A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes A bipartite interaction between Hsp70 and CHIP regulates ubiquitination of chaperoned client proteins OptMAVEn--a new framework for the de novo design of antibody variable region models targeting specific antigen epitopes.Survivin-specific T cell receptor targets tumor but not T cells.Protein-protein docking with dynamic residue protonation states Application of Enhanced Sampling Monte Carlo Methods for High-Resolution Protein-Protein Docking in Rosetta.Structure of Staphylococcal Enterotoxin E in Complex with TCR Defines the Role of TCR Loop Positioning in Superantigen Recognition.A Cross-Reactive Human Single-Chain Antibody for Detection of Major Fish Allergens, Parvalbumins, and Identification of a Major IgE-Binding Epitope.Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.Rapid calculation of protein pKa values using Rosetta.Computational and Functional Analysis of the Virus-Receptor Interface Reveals Host Range Trade-Offs in New World Arenaviruses.Regulation of neural gene transcription by optogenetic inhibition of the RE1-silencing transcription factor Characterization and Structural Insights into Selective E1-E2 Interactions in the Human and Plasmodium falciparum SUMO Conjugation Systems Rearrangement of the Extracellular Domain/Extracellular Loop 1 Interface Is Critical for Thyrotropin Receptor Activation GalaxyRefineComplex: Refinement of protein-protein complex model structures driven by interface repacking.Protocols for Molecular Modeling with Rosetta3 and RosettaScripts ALS mutant SOD1 interacts with G3BP1 and affects stress granule dynamics Monomeric gremlin is a novel vascular endothelial growth factor receptor-2 antagonist.CotH3 mediates fungal invasion of host cells during mucormycosis.

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P2860

Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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2011 nî lūn-bûn

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2011 թուականի Օգոստոսին հրատարակուած գիտական յօդուած

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2011 թվականի օգոստոսին հրատարակված գիտական հոդված

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2011年の論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年論文

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2011年论文

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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JOURNAL.PONE.0022477

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Benchmarking and analysis of protein docking performance in Rosetta v3.2.

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Hannah Bergman

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Monica Berrondo

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Pravin Muthu

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Sidhartha Chaudhury

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P2860

The Protein Data Bank

Improved side-chain modeling for protein-protein docking

Real-time PyMOL visualization for Rosetta and PyRosetta

Crystallographic studies of the interaction between the ferredoxin-NADP+ reductase and ferredoxin from the cyanobacterium Anabaena: looking for the elusive ferredoxin molecule

Mechanism of coenzyme recognition and binding revealed by crystal structure analysis of ferredoxin-NADP+ reductase complexed with NADP+

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock

Protein-Protein Docking Benchmark 2.0: an update

SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology models

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51559939

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21829626

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3149062

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