Improved side-chain modeling for protein-protein docking
about
Crystal structure of the HSV-1 Fc receptor bound to Fc reveals a mechanism for antibody bipolar bridging.Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen dockingThe RosettaDock server for local protein-protein dockingHigh-resolution structure prediction and the crystallographic phase problemIntegrative Modeling of Macromolecular Assemblies from Low to Near-Atomic ResolutionIn silico prediction of mutant HIV-1 proteases cleaving a target sequenceA New Twist in TCR Diversity Revealed by a Forbidden αβ TCRStructure of KCNE1 and Implications for How It Modulates the KCNQ1 Potassium Channel † ‡SnugDock: paratope structural optimization during antibody-antigen docking compensates for errors in antibody homology modelsProtein design using continuous rotamersStructure and specificity of the bacterial cysteine methyltransferase effector NleE suggests a novel substrate in human DNA repair pathwayCombined covalent-electrostatic model of hydrogen bonding improves structure prediction with RosettaROSETTA3: an object-oriented software suite for the simulation and design of macromoleculesScientific benchmarks for guiding macromolecular energy function improvementProtein side-chain modeling with a protein-dependent optimized rotamer library.Factors affecting the use of 13C(alpha) chemical shifts to determine, refine, and validate protein structuresStructure prediction of domain insertion proteins from structures of individual domains.Improved packing of protein side chains with parallel ant colonies.Explicit orientation dependence in empirical potentials and its significance to side-chain modelingProbing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics.Improving hybrid statistical and physical forcefields through local structure enumeration.Protein-protein structure prediction by scoring molecular dynamics trajectories of putative poses.Beyond rotamers: a generative, probabilistic model of side chains in proteins.Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.Quantifying side-chain conformational variations in protein structureMultistate Computational Protein Design with Backbone Ensembles.Monte Carlo replica-exchange based ensemble docking of protein conformations.Computed structures of point deletion mutants and their enzymatic activities.Dead-end elimination with perturbations (DEEPer): a provable protein design algorithm with continuous sidechain and backbone flexibility.Generation, comparison, and merging of pathways between protein conformations: gating in K-channels.MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data.Prediction of side-chain conformations on protein surfaces.Identification of structural mechanisms of HIV-1 protease specificity using computational peptide docking: implications for drug resistance.Discrimination of near-native structures in protein-protein docking by testing the stability of local minima.Sampling the conformation of protein surface residues for flexible protein docking.Rosetta FlexPepDock ab-initio: simultaneous folding, docking and refinement of peptides onto their receptors.Benchmarking and analysis of protein docking performance in Rosetta v3.2.An energy-based conformer library for side chain optimization: improved prediction and adjustable sampling.Backbone dependency further improves side chain prediction efficiency in the Energy-based Conformer Library (bEBL).Computational docking of antibody-antigen complexes, opportunities and pitfalls illustrated by influenza hemagglutinin.
P2860
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P2860
Improved side-chain modeling for protein-protein docking
description
2005 nî lūn-bûn
@nan
2005 թուականի Մայիսին հրատարակուած գիտական յօդուած
@hyw
2005 թվականի մայիսին հրատարակված գիտական հոդված
@hy
2005年の論文
@ja
2005年論文
@yue
2005年論文
@zh-hant
2005年論文
@zh-hk
2005年論文
@zh-mo
2005年論文
@zh-tw
2005年论文
@wuu
name
Improved side-chain modeling for protein-protein docking
@ast
Improved side-chain modeling for protein-protein docking
@en
Improved side-chain modeling for protein-protein docking
@nl
type
label
Improved side-chain modeling for protein-protein docking
@ast
Improved side-chain modeling for protein-protein docking
@en
Improved side-chain modeling for protein-protein docking
@nl
prefLabel
Improved side-chain modeling for protein-protein docking
@ast
Improved side-chain modeling for protein-protein docking
@en
Improved side-chain modeling for protein-protein docking
@nl
P2860
P50
P3181
P356
P1433
P1476
Improved side-chain modeling for protein-protein docking
@en
P2860
P304
P3181
P356
10.1110/PS.041222905
P407
P577
2005-05-01T00:00:00Z