Kinetics of target site localization of a protein on DNA: a stochastic approach.
about
Single molecule fluorescence approaches shed light on intracellular RNAsAn integrated model of transcription factor diffusion shows the importance of intersegmental transfer and quaternary protein structure for target site finding.Protein structure. Engineering of a superhelicase through conformational controlHow DNA coiling enhances target localization by proteinsOn the mechanism of recombination hotspot scanning during double-stranded DNA break resection.Method for the analysis of contribution of sliding and hopping to a facilitated diffusion of DNA-binding protein: Application to in vivo data.Intermittent Brownian dynamics over a rigid strand: heavily tailed relocation statistics in a simple geometry.Characteristics of transcriptional activity in nonlinear dynamics of genetic regulatory networks.Computational models for large-scale simulations of facilitated diffusionDiffusion of the restriction nuclease EcoRI along DNA.Dynamic strategies for target-site search by DNA-binding proteins.Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.A model for the mediation of processivity of DNA-targeting proteins by nonspecific binding: dependence on DNA length and presence of obstacles.Target search of N sliding proteins on a DNAHow proteins search for their specific sites on DNA: the role of DNA conformationIn vivo facilitated diffusion model.Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins.Mathematical descriptions of biochemical networks: stability, stochasticity, evolution.How gene order is influenced by the biophysics of transcription regulation.Single phage T4 DNA packaging motors exhibit large force generation, high velocity, and dynamic variability.Dancing on DNA: kinetic aspects of search processes on DNARandom-walk enzymesProbing microscopic origins of confined subdiffusion by first-passage observables.Spatial effects on the speed and reliability of protein-DNA search.Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.Sequence-dependent nanometer-scale conformational dynamics of individual RecBCD-DNA complexesFacilitated diffusion with DNA coiling.A mathematical model for scanning and catalysis on single-stranded DNA, illustrated with activation-induced deoxycytidine deaminasePhysics of protein-DNA interactions: mechanisms of facilitated target search.Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review.Physical limits on cooperative protein-DNA binding and the kinetics of combinatorial transcription regulation.Physical constraints determine the logic of bacterial promoter architectures.Rad4 recognition-at-a-distance: Physical basis of conformation-specific anomalous diffusion of DNA repair proteins.Real sequence effects on the search dynamics of transcription factors on DNA.Theory of site-specific DNA-protein interactions in the presence of conformational fluctuations of DNA binding domains.Geometry-induced bursting dynamics in gene expression.A quantitative study of lambda-phage SWITCH and its components.Generalized facilitated diffusion model for DNA-binding proteins with search and recognition statesDiffusion of transcription factors can drastically enhance the noise in gene expression.Acceleration of bursty multiprotein target search kinetics on DNA by colocalisation.
P2860
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P2860
Kinetics of target site localization of a protein on DNA: a stochastic approach.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
Kinetics of target site localization of a protein on DNA: a stochastic approach.
@en
type
label
Kinetics of target site localization of a protein on DNA: a stochastic approach.
@en
prefLabel
Kinetics of target site localization of a protein on DNA: a stochastic approach.
@en
P2093
P2860
P1433
P1476
Kinetics of target site localization of a protein on DNA: a stochastic approach
@en
P2093
P2860
P304
P356
10.1529/BIOPHYSJ.104.045773
P407
P577
2004-09-01T00:00:00Z
P5875
P698
P818
q-bio/0502034