Analysis of single-molecule FRET trajectories using hidden Markov modeling. - Wikidata - wikimedia - TriplyDB

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

http://www.wikidata.org/entity/Q34536849

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Single-molecule dataset (SMD): a generalized storage format for raw and processed single-molecule data Tyrosine phosphorylation enhances RAD52-mediated annealing by modulating its DNA binding.HIV-1 Rev protein assembles on viral RNA one molecule at a time.smFRET studies of the 'encounter' complexes and subsequent intermediate states that regulate the selectivity of ligand binding Ribosomal initiation complex-driven changes in the stability and dynamics of initiation factor 2 regulate the fidelity of translation initiation Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale An extended U2AF(65)-RNA-binding domain recognizes the 3' splice site signal Allosteric ring assembly and chemo-mechanical melting by the interaction between 5'-phosphate and λ exonuclease.Activation-induced deoxycytidine deaminase (AID) co-transcriptional scanning at single-molecule resolution.Conformational dynamics of stem II of the U2 snRNA.FRETBursts: An Open Source Toolkit for Analysis of Freely-Diffusing Single-Molecule FRET Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Experiments Single Molecule Analysis Research Tool (SMART): an integrated approach for analyzing single molecule data F1-ATPase conformational cycle from simultaneous single-molecule FRET and rotation measurements Plasmodium falciparum SSB tetramer binds single-stranded DNA only in a fully wrapped mode Conformational dynamics of single pre-mRNA molecules during in vitro splicing.A photoprotection strategy for microsecond-resolution single-molecule fluorescence spectroscopy.Single-molecule FRET of protein structure and dynamics - a primer.Immobilization of proteins for single-molecule fluorescence resonance energy transfer measurements of conformation and dynamics.High-resolution optical tweezers for single-molecule manipulation.DNA looping kinetics analyzed using diffusive hidden Markov model.Single VS ribozyme molecules reveal dynamic and hierarchical folding toward catalysis.36 degrees step size of proton-driven c-ring rotation in FoF1-ATP synthase.Dissecting protein-induced DNA looping dynamics in real time.Activated GTPase movement on an RNA scaffold drives co-translational protein targeting Mechanical unfolding of human telomere G-quadruplex DNA probed by integrated fluorescence and magnetic tweezers spectroscopy.AID and Apobec3G haphazard deamination and mutational diversity Quantifying elongation rhythm during full-length protein synthesis A practical guide to single-molecule FRET Cooperative conformational transitions keep RecA filament active during ATPase cycle BOBA FRET: bootstrap-based analysis of single-molecule FRET data Single-molecule FRET studies of the cooperative and non-cooperative binding kinetics of the bacteriophage T4 single-stranded DNA binding protein (gp32) to ssDNA lattices at replication fork junctions.Fast Step Transition and State Identification (STaSI) for Discrete Single-Molecule Data Analysis.Molecular dynamics simulation of configurational ensembles compatible with experimental FRET efficiency data through a restraint on instantaneous FRET efficiencies.Sequential data assimilation for single-molecule FRET photon-counting data.Hierarchically-coupled hidden Markov models for learning kinetic rates from single-molecule data Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results.Analysis of kinetics in noisy systems: application to single molecule tethered particle motion.Learning rates and states from biophysical time series: a Bayesian approach to model selection and single-molecule FRET data Denoising single-molecule FRET trajectories with wavelets and Bayesian inference.

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P2860

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

http://www.wikidata.org/entity/Q34536849

description

2006 nî lūn-bûn

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2006 թուականի Յունիսին հրատարակուած գիտական յօդուած

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2006 թվականի հունիսին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年論文

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2006年论文

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name

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

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Analysis of single-molecule FRET trajectories using hidden Markov modeling.

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Analysis of single-molecule FRET trajectories using hidden Markov modeling.

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type

label

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

@ast

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

@en

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

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prefLabel

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

@ast

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

@en

Analysis of single-molecule FRET trajectories using hidden Markov modeling.

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BIOPHYSJ.106.082487

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Biophysical Journal

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Analysis of single-molecule FRET trajectories using hidden Markov modeling.

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Sean A McKinney

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P2860

Hidden Markov modeling for single channel kinetics with filtering and correlated noise

Profile hidden Markov models

Extreme conformational diversity in human telomeric DNA

Observing spontaneous branch migration of Holliday junctions one step at a time

Correlating structural dynamics and function in single ribozyme molecules.

A direct optimization approach to hidden Markov modeling for single channel kinetics.

Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic.

Protein conformational dynamics probed by single-molecule electron transfer.

What is a hidden Markov model?

Real-time observation of RecA filament dynamics with single monomer resolution.

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