Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques.
about
Species-specific transcription in mice carrying human chromosome 21HOCOMOCO: a comprehensive collection of human transcription factor binding sites modelsInsights from genomic profiling of transcription factorsORegAnno: an open-access community-driven resource for regulatory annotationUncovering transcription factor modules using one- and three-dimensional analysesExploring the effects of polymorphisms on cis-regulatory signal transduction responseIdentifying novel transcriptional components controlling energy metabolismHyCCAPP as a tool to characterize promoter DNA-protein interactions in Saccharomyces cerevisiae.Emerging applications of read profiles towards the functional annotation of the genomeIdentification of genomic features in environmentally induced epigenetic transgenerational inherited sperm epimutationsMISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequencesHigh resolution detection and analysis of CpG dinucleotides methylation using MBD-Seq technologyDiffLogo: a comparative visualization of sequence motifsSNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studiesDISCOVER: a feature-based discriminative method for motif search in complex genomesGenome-wide epigenetic data facilitate understanding of disease susceptibility association studies.Detection of regulatory SNPs in human genome using ChIP-seq ENCODE dataApplication of experimentally verified transcription factor binding sites models for computational analysis of ChIP-Seq data.Prediction and experimental validation of novel STAT3 target genes in human cancer cellsA computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1Correlated evolution of positions within mammalian cis elements.Integrated modeling and experimental approach for determining transcription factor profiles from fluorescent reporter dataMultiple non-collinear TF-map alignments of promoter regions.Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site.A feature-based approach to modeling protein-DNA interactionsCompMoby: comparative MobyDick for detection of cis-regulatory motifsPrediction of regulatory elements in mammalian genomes using chromatin signatures.Evolution of regulatory sequences in 12 Drosophila species.Cloning-free regulated monitoring of reporter and gene expression.ChIP-seq: using high-throughput sequencing to discover protein-DNA interactionsPromoter analysis: gene regulatory motif identification with A-GLAM.Modeling the quantitative specificity of DNA-binding proteins from example binding sites.Seed storage protein gene promoters contain conserved DNA motifs in Brassicaceae, Fabaceae and PoaceaeGenome-wide identification of hypoxia-inducible factor binding sites and target genes by a probabilistic model integrating transcription-profiling data and in silico binding site prediction.CircuitsDB: a database of mixed microRNA/transcription factor feed-forward regulatory circuits in human and mouse.Imogene: identification of motifs and cis-regulatory modules underlying gene co-regulation.WSMD: weakly-supervised motif discovery in transcription factor ChIP-seq data.Novel computational analysis of protein binding array data identifies direct targets of Nkx2.2 in the pancreas.Advanced methods for the analysis of chromatin-associated proteins.
P2860
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P2860
Locating mammalian transcription factor binding sites: a survey of computational and experimental techniques.
description
2006 nî lūn-bûn
@nan
2006 թուականի Հոկտեմբերին հրատարակուած գիտական յօդուած
@hyw
2006 թվականի հոտեմբերին հրատարակված գիտական հոդված
@hy
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
name
Locating mammalian transcripti ...... l and experimental techniques.
@ast
Locating mammalian transcripti ...... l and experimental techniques.
@en
Locating mammalian transcripti ...... l and experimental techniques.
@nl
type
label
Locating mammalian transcripti ...... l and experimental techniques.
@ast
Locating mammalian transcripti ...... l and experimental techniques.
@en
Locating mammalian transcripti ...... l and experimental techniques.
@nl
prefLabel
Locating mammalian transcripti ...... l and experimental techniques.
@ast
Locating mammalian transcripti ...... l and experimental techniques.
@en
Locating mammalian transcripti ...... l and experimental techniques.
@nl
P356
P1433
P1476
Locating mammalian transcripti ...... l and experimental techniques.
@en
P2093
Steven J M Jones
Victor X Jin
P304
P356
10.1101/GR.4140006
P577
2006-10-19T00:00:00Z