ALLPATHS: de novo assembly of whole-genome shotgun microreads. - Wikidata - wikimedia - TriplyDB

ALLPATHS: de novo assembly of whole-genome shotgun microreads.

ALLPATHS: de novo assembly of whole-genome shotgun microreads.

http://www.wikidata.org/entity/Q34761631

about

Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication Personal genome sequencing: current approaches and challenges Optimization of de novo transcriptome assembly from next-generation sequencing data Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies Full-length transcriptome assembly from RNA-Seq data without a reference genome SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing Annotating genomes with massive-scale RNA sequencing De novo assembly of human genomes with massively parallel short read sequencing The A, C, G, and T of Genome Assembly Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine Survey of Programs Used to Detect Alternative Splicing Isoforms from Deep Sequencing Data In Silico Evaluation of short read metagenomic assembly Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species Metagenomic Assembly: Overview, Challenges and Applications Next-generation sequencing approach for connecting secondary metabolites to biosynthetic gene clusters in fungi Complete genome sequences for 35 biothreat assay-relevant bacillus species Bibliometric analysis of publications on Campylobacter: (2000-2015)A clone-free, single molecule map of the domestic cow (Bos taurus) genome Estimation of sequencing error rates in short reads The human transcriptome: an unfinished story Comparing de novo genome assembly: the long and short of it Meraculous: de novo genome assembly with short paired-end reads How to apply de Bruijn graphs to genome assembly ABySS: a parallel assembler for short read sequence data High-quality draft assemblies of mammalian genomes from massively parallel sequence data Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels 3DScapeCS: application of three dimensional, parallel, dynamic network visualization in Cytoscape Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data.Evaluating de Bruijn graph assemblers on 454 transcriptomic data Semi-automatic in silico gap closure enabled de novo assembly of two Dehalobacter genomes from metagenomic data PRICE: software for the targeted assembly of components of (Meta) genomic sequence data Computational solutions for omics data.Effects of GC bias in next-generation-sequencing data on de novo genome assembly SV-AUTOPILOT: optimized, automated construction of structural variation discovery and benchmarking pipelines.Next-generation sequence assembly: four stages of data processing and computational challenges Bioinformatics for next generation sequencing data.Reference-free SNP detection: dealing with the data deluge.A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

http://www.wikidata.org/entity/Q34761631

description

2008 nî lūn-bûn

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2008 թուականի Մարտին հրատարակուած գիտական յօդուած

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2008 թվականի մարտին հրատարակված գիտական հոդված

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2008年の論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年論文

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2008年论文

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name

ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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type

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

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Genome Research

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ALLPATHS: de novo assembly of whole-genome shotgun microreads.

@en

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David B Jaffe

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Iain MacCallum

http://www.w3.org/2001/XMLSchema#string

Ilya A Shlyakhter

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Jonathan Butler

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Michael Kleber

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DNA sequencing with chain-terminating inhibitors

An Eulerian path approach to DNA fragment assembly

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing

ARACHNE: a whole-genome shotgun assembler

A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms

Accurate multiplex polony sequencing of an evolved bacterial genome

Genome-wide mapping of in vivo protein-DNA interactions

Extending assembly of short DNA sequences to handle error.

Assembling millions of short DNA sequences using SSAKE.

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810-820

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scholarly article

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10.1101/GR.7337908

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5

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18

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Matthew Belmonte

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2008-03-13T00:00:00Z

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5512383

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18340039

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2336810

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