Methidiumpropyl-EDTA.Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA - Wikidata - wikimedia - TriplyDB

Methidiumpropyl-EDTA.Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA

Methidiumpropyl-EDTA.Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA

http://www.wikidata.org/entity/Q35685739

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Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein Choosing a suitable method for the identification of replication origins in microbial genomes DNA-protein interactions: methods for detection and analysis.Topoisomerase I-mediated DNA cleavage induced by the minor groove-directed binding of bibenzimidazoles to a distal site Chemical footprinting of 5S RNA chromatin in embryos of Drosophila melanogaster The molecular origin of DNA-drug specificity in netropsin and distamycin.Demonstration of the asymmetric effect of CC-1065 on local DNA structure using a site-directed adduct in a 117-base-pair fragment from M13mp1 Protein-binding site at the immunoglobulin mu membrane polyadenylylation signal: possible role in transcription termination.A common positive trans-acting factor binds to enhancer sequences in the promoters of mouse H-2 and beta 2-microglobulin genes.Photoaffinity approaches to determining the sequence selectivities of DNA-small molecule interactions: actinomycin D and ethidium.Molecular recognition of B-DNA by Hoechst 33258.A continuous assay for DNA cleavage: the application of "break lights" to enediynes, iron-dependent agents, and nucleases Interactions of the RNA polymerase of bacteriophage T7 with its promoter during binding and initiation of transcription DNA-sequence specific recognition by a thiazole analogue of netropsin: a comparative footprinting study.The basis for camptothecin enhancement of DNA breakage by eukaryotic topoisomerase I.High resolution footprinting of EcoRI and distamycin with Rh(phi)2(bpy)3+, a new photofootprinting reagent.Probing Retroviral and Retrotransposon Genome Structures: The "SHAPE" of Things to Come.Interaction of drugs with branched DNA structures.Non-p53 p53RE binding protein, a human transcription factor functionally analogous to P53.Multiple proteins bind to VA RNA genes of adenovirus type 2 Constitutive transcription of yeast ribosomal protein gene TCM1 is promoted by uncommon cis- and trans-acting elements Binding of multiple nuclear factors to the 5' upstream regulatory element of the murine major histocompatibility class I gene.Affinity purification of sequence-specific DNA binding proteins.Theoretical analysis of the footprinting experiment.Formation of adriamycin--DNA adducts in vitro.Sequence-specific binding of echinomycin to DNA: evidence for conformational changes affecting flanking sequences.DNA structural variations produced by actinomycin and distamycin as revealed by DNAase I footprinting.Interaction of berenil with the tyrT DNA sequence studied by footprinting and molecular modelling. Implications for the design of sequence-specific DNA recognition agents.Biochemical and biophysical studies on the folding of the core region of the origin of replication of bacteriophage M13.Adenosine-guanosine preferential photocleavage of DNA by azido-benzoyl- and diazocyclopenta-dienylcarbonyloxy derivatives of 9-aminoacridine.Photocleavage of DNA and photofootprinting of E. coli RNA polymerase bound to promoter DNA by azido-9-acridinylamines.Methidiumpropyl-EDTA-iron(II) cleavage of ribosomal DNA chromatin from Dictyostelium discoideum.Footprinting at low temperatures: evidence that ethidium and other simple intercalators can discriminate between different nucleotide sequences.Kinetic evidence that echinomycin migrates between potential DNA binding sites Chemical nucleases as probes for studying DNA-protein interactions Sequence-selective binding of phleomycin to DNA.Localized chemical reactivity in DNA associated with the sequence-specific bisintercalation of echinomycin.Unusual DNA binding exhibited by synthetic distamycin analogues lacking the N-terminal amide unit under high salt conditions.Distamycin and penta-N-methylpyrrolecarboxamide binding sites on native DNA. A comparison of methidiumpropyl-EDTA-Fe(II) footprinting and DNA affinity cleaving.Effect of various intercalators on the fenton-type oxidative cleavage of double-stranded DNA.

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Methidiumpropyl-EDTA.Fe(II) and DNase I footprinting report different small molecule binding site sizes on DNA

http://www.wikidata.org/entity/Q35685739

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1983 nî lūn-bûn

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P2860

DNAse footprinting: a simple method for the detection of protein-DNA binding specificity

Sequencing end-labeled DNA with base-specific chemical cleavages

Specificity of deoxyribonucleic acid cleavage by bleomycin, phleomycin, and tallysomycin.

Map of distamycin, netropsin, and actinomycin binding sites on heterogeneous DNA: DNA cleavage-inhibition patterns with methidiumpropyl-EDTA.Fe(II).

Mutual interaction between adjacent dG . dC actinomycin binding sites and dA . dT netropsin binding sites on the self-complementary d(C-G-C-G-A-A-T-T-C-G-C-G) duplex in solution

Basis of actinomycin action. I. DNA binding and inhibition of RNA-polymerase synthetic reactions by actinomycin

Sequence specific cleavage of DNA by the antitumor antibiotics neocarzinostatin and bleomycin.

Interaction of bleomycin with DNA.

Sequence specificity of actinomycin D and Netropsin binding to pBR322 DNA analyzed by protection from DNase I.

The stereochemistry of actinomycin binding to DNA and its implications in molecular biology.

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