about
Structural diversity of supercoiled DNA.DNA minicircles clarify the specific role of DNA structure on retroviral integrationNano-mechanical measurements of protein-DNA interactions with a silicon nitride pulleyConformational analysis of nucleic acids revisited: Curves+Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicirclesDNA supercoiling and its role in DNA decatenation and unknotting.Modulation of cyclobutane thymine photodimer formation in T11-tracts in rotationally phased nucleosome core particles and DNA minicirclesBending the rules of transcriptional repression: tightly looped DNA directly represses T7 RNA polymerase.Probing the elastic limit of DNA bendingDNA curvature and flexibility in vitro and in vivo.Gene repression by minimal lac loops in vivo.Temperature dependence of DNA persistence length.Cooperative kinking at distant sites in mechanically stressed DNA.Ionic switch controls the DNA state in phage λRevisiting the Anomalous Bending Elasticity of Sharply Bent DNAParmbsc1: a refined force field for DNA simulations.Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity.Bullied no more: when and how DNA shoves proteins around.Theoretical analysis of disruptions in DNA minicirclesThe flexibility of locally melted DNALong-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulationDNA information: from digital code to analogue structure.Small DNA circles as probes of DNA topology.Strong bending of the DNA double helix.Dynamic Release of Bending Stress in Short dsDNA by Formation of a Kink and ForksProduction of DNA minicircles less than 250 base pairs through a novel concentrated DNA circularization assay enabling minicircle design with NF-κB inhibition activity.Single-molecule fluorescence studies on DNA loopingStructure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics.Effects of kink and flexible hinge defects on mechanical responses of short double-stranded DNA molecules.Extreme bendability of DNA double helix due to bending asymmetry.Bending of short DNA helices.Discontinuities at the DNA supercoiling transition.Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis.Bending modes of DNA directly addressed by cryo-electron microscopy of DNA minicircles.Atomic force microscopy study of DNA flexibility on short length scales: smooth bending versus kinkingProbing the elasticity of DNA on short length scales by modeling supercoiling under tension.Global force-torque phase diagram for the DNA double helix: structural transitions, triple points, and collapsed plectonemes.Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.Euler buckling and nonlinear kinking of double-stranded DNA.Consequences of local inter-strand dehybridization for large-amplitude bending fluctuations of double-stranded DNA.
P2860
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P2860
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Kinking the double helix by bending deformation
@ast
Kinking the double helix by bending deformation
@en
type
label
Kinking the double helix by bending deformation
@ast
Kinking the double helix by bending deformation
@en
prefLabel
Kinking the double helix by bending deformation
@ast
Kinking the double helix by bending deformation
@en
P2093
P2860
P356
P1476
Kinking the double helix by bending deformation
@en
P2093
Alexander Kotlyar
Alexander Vologodskii
P2860
P304
P356
10.1093/NAR/GKM1125
P407
P577
2007-12-20T00:00:00Z