Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. - Wikidata - wikimedia - TriplyDB

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components.

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components.

http://www.wikidata.org/entity/Q36676535

about

Origin and evolution of spliceosomal introns The significant other: splicing by the minor spliceosome Comparative analysis of RNA families reveals distinct repertoires for each domain of life Conservation and losses of non-coding RNAs in avian genomes The tedious task of finding homologous noncoding RNA genes Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes.The minor spliceosomal protein U11/U12-31K is an RNA chaperone crucial for U12 intron splicing and the development of dicot and monocot plants.Evolutionary convergence on highly-conserved 3' intron structures in intron-poor eukaryotes and insights into the ancestral eukaryotic genome U12 type introns were lost at multiple occasions during evolution.Evolutionary dynamics of U12-type spliceosomal introns.Origin of spliceosomal introns and alternative splicing Characterization of newly gained introns in Daphnia populations.Comparative analysis of information contents relevant to recognition of introns in many species Transcriptome analysis of the parasite Encephalitozoon cuniculi: an in-depth examination of pre-mRNA splicing in a reduced eukaryote RNA-Seq analysis of splicing in Plasmodium falciparum uncovers new splice junctions, alternative splicing and splicing of antisense transcripts Functionally important structural elements of U12 snRNA Splicing diversity revealed by reduced spliceosomes in C. merolae and other organisms Widespread recurrent evolution of genomic features.Genome-wide evolutionary analysis of the noncoding RNA genes and noncoding DNA of Paramecium tetraurelia.U6atac snRNA stem-loop interacts with U12 p65 RNA binding protein and is functionally interchangeable with the U12 apical stem-loop III.The conserved 3' end domain of U6atac snRNA can direct U6 snRNA to the minor spliceosome.The modern RNP world of eukaryotes.Aberrant splicing in maize rough endosperm3 reveals a conserved role for U12 splicing in eukaryotic multicellular development.Comparative genomics in the Amoebozoa clade.Whence genes in pieces: reconstruction of the exon-intron gene structures of the last eukaryotic common ancestor and other ancestral eukaryotes.Evolution of vault RNAs.PRD-1, a Component of the Circadian System of Neurospora crassa, Is a Member of the DEAD-box RNA Helicase Family.U12-type spliceosomal introns of Insecta.Evolutionarily divergent spliceosomal snRNAs and a conserved non-coding RNA processing motif in Giardia lamblia.A structural analysis of the group II intron active site and implications for the spliceosome.Domestication of self-splicing introns during eukaryogenesis: the rise of the complex spliceosomal machinery.RNA-RNA interaction prediction based on multiple sequence alignments.Multispecies reconstructions uncover widespread conservation, and lineage-specific elaborations in eukaryotic mRNA metabolism.An evaluation of function of multicopy non-coding RNAs in mammals using ENCODE/FANTOM data and comparative genomics.Evolution and Diversity of Pre-mRNA Splicing in Highly Reduced Nucleomorph Genomes.Life and Death of mRNA Molecules in Entamoeba histolytica.Noncoding RNA Comparative Study on Alternative Splicing in Human Fungal Pathogens Suggests Its Involvement During Host Invasion Postsplicing-Derived Full-Length Intron Circles in the Protozoan Parasite

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P2860

Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components.

http://www.wikidata.org/entity/Q36676535

description

2008 nî lūn-bûn

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Computational screen for splic ...... minor spliceosomal components.

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Computational screen for splic ...... minor spliceosomal components.

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Computational screen for splic ...... minor spliceosomal components.

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Magnus Alm Rosenblad

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Marcela Dávila López

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Tore Samuelsson

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P2860

A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure

A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae

Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

RNA structural requirements for the association of the spliceosomal hPrp31 protein with the U4 and U4atac small nuclear ribonucleoproteins

A novel U2 and U11/U12 snRNP protein that associates with the pre-mRNA branch site.

Base pairing with U6atac snRNA is required for 5' splice site activation of U12-dependent introns in vivo.

Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea

The spliceosomal snRNAs of Caenorhabditis elegans

Improved tools for biological sequence comparison.

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10.1093/NAR/GKN142

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9

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36

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2396436

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