Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
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DotKnot: pseudoknot prediction using the probability dot plot under a refined energy modelPredicting pseudoknotted structures across two RNA sequencesIdentification of potential conserved RNA secondary structure throughout influenza A coding regionsShape and secondary structure prediction for ncRNAs including pseudoknots based on linear SVMStructural computational modeling of RNA aptamersPrediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model.Improved free energy parameters for RNA pseudoknotted secondary structure prediction.NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure.Structural dynamics of a single-stranded RNA-helix junction using NMR.Predicting structure and stability for RNA complexes with intermolecular loop-loop base-pairingPredicting loop-helix tertiary structural contacts in RNA pseudoknots.RNA pseudoknots: folding and finding.Theory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.ProbKnot: fast prediction of RNA secondary structure including pseudoknots.Assembly and activation of a kinase ribozymeA conserved RNA pseudoknot in a putative molecular switch domain of the 3'-untranslated region of coronaviruses is only marginally stable.Vfold: a web server for RNA structure and folding thermodynamics prediction.Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signalRNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures.A Method to Predict the 3D Structure of an RNA ScaffoldRNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure predictionPredicting kissing interactions in microRNA-target complex and assessment of microRNA activity.VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability.Mimicking Ribosomal Unfolding of RNA Pseudoknot in a Protein Channel.Coarse-graining RNA nanostructures for molecular dynamics simulations.Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimationIdentification of conserved RNA secondary structures at influenza B and C splice sites reveals similarities and differences between influenza A, B, and C.Capturing RNA Folding Free Energy with Coarse-Grained Molecular Dynamics Simulations.Automated physics-based design of synthetic riboswitches from diverse RNA aptamersCounting RNA pseudoknotted structures.Physics-based RNA structure prediction.Mutant swarms of a totivirus-like entities are present in the red macroalga Chondrus crispus and have been partially transferred to the nuclear genome.A Method to Predict the Structure and Stability of RNA/RNA Complexes.The Influenza A PB1-F2 and N40 Start Codons Are Contained within an RNA Pseudoknot.Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.Coarse-grained prediction of RNA loop structures.Molecular characterization of totiviruses in Xanthophyllomyces dendrorhous.Kinetic mechanism of conformational switch between bistable RNA hairpins.Algebraic and combinatorial properties of common RNA pseudoknot classes with applications.A domain-based model for predicting large and complex pseudoknotted structures.
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Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 23 February 2009
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
@en
Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
@nl
type
label
Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
@en
Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
@nl
prefLabel
Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
@en
Predicting structures and stabilities for H-type pseudoknots with interhelix loops.
@nl
P2860
P356
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P1476
Predicting structures and stabilities for H-type pseudoknots with interhelix loops
@en
P2093
P2860
P304
P356
10.1261/RNA.1429009
P407
P50
P577
2009-02-23T00:00:00Z