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RNAMotif, an RNA secondary structure definition and search algorithm

RNAMotif, an RNA secondary structure definition and search algorithm

http://www.wikidata.org/entity/Q39489150

about

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti Identification of hammerhead ribozymes in all domains of life reveals novel structural variations Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation The distributions, mechanisms, and structures of metabolite-binding riboswitches Annotation and evolutionary relationships of a small regulatory RNA gene micF and its target ompF in Yersinia species A motif-based search in bacterial genomes identifies the ortholog of the small RNA Yfr1 in all lineages of cyanobacteria The transcriptional landscape of the deep-sea bacterium Photobacterium profundum in both a toxR mutant and its parental strain RNase MRP and the RNA processing cascade in the eukaryotic ancestor Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics Query-dependent banding (QDB) for faster RNA similarity searches Computing expectation values for RNA motifs using discrete convolutions sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.The ERPIN server: an interface to profile-based RNA motif identification Genome-wide searching for pseudouridylation guide snoRNAs: analysis of the Saccharomyces cerevisiae genome Structator: fast index-based search for RNA sequence-structure patterns RNA CoSSMos: Characterization of Secondary Structure Motifs--a searchable database of secondary structure motifs in RNA three-dimensional structures The ubiquitous hammerhead ribozyme Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles RSEARCH: finding homologs of single structured RNA sequences Using RNA secondary structures to guide sequence motif finding towards single-stranded regions Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2 AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis A method for aligning RNA secondary structures and its application to RNA motif detection A three-stemmed mRNA pseudoknot in the SARS coronavirus frameshift signal Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.Computational analysis of noncoding RNAs Searching for IRES Neisseria conserved protein DMP19 is a DNA mimic protein that prevents DNA binding to a hypothetical nitrogen-response transcription factor Identification of novel regulatory small RNAs in Acinetobacter baumannii Ro-associated Y RNAs in metazoans: evolution and diversification Analysis of the EIAV Rev-responsive element (RRE) reveals a conserved RNA motif required for high affinity Rev binding in both HIV-1 and EIAV Retrozymes are a unique family of non-autonomous retrotransposons with hammerhead ribozymes that propagate in plants through circular RNAs A new approach for detecting riboswitches in DNA sequences Annotating RNA motifs in sequences and alignments RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search Attenuation of loop-receptor interactions with pseudoknot formation Fast filtering for RNA homology search The tedious task of finding homologous noncoding RNA genes

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P2860

RNAMotif, an RNA secondary structure definition and search algorithm

http://www.wikidata.org/entity/Q39489150

description

2001 nî lūn-bûn

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2001年の論文

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2001年学术文章

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2001年学术文章

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2001年学术文章

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2001年学术文章

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2001年学术文章

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2001年學術文章

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2001年學術文章

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2001年學術文章

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name

RNAMotif, an RNA secondary structure definition and search algorithm

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RNAMotif, an RNA secondary structure definition and search algorithm.

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type

label

RNAMotif, an RNA secondary structure definition and search algorithm

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RNAMotif, an RNA secondary structure definition and search algorithm.

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prefLabel

RNAMotif, an RNA secondary structure definition and search algorithm

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RNAMotif, an RNA secondary structure definition and search algorithm.

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RNAMotif, an RNA secondary structure definition and search algorithm

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D A Case

http://www.w3.org/2001/XMLSchema#string

D J Ecker

http://www.w3.org/2001/XMLSchema#string

R R Gutell

http://www.w3.org/2001/XMLSchema#string

R Sampath

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T J Macke

http://www.w3.org/2001/XMLSchema#string

P2860

RNA-protein interactions within the 3 ' untranslated region of vimentin mRNA

Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

Structure of the most conserved internal loop in SRP RNA

Structure of the phylogenetically most conserved domain of SRP RNA.

Crystal structure of the ribonucleoprotein core of the signal recognition particle

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

Structure of the 30S ribosomal subunit

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

The Fukuyama congenital muscular dystrophy story

A novel duodenal iron-regulated transporter, IREG1, implicated in the basolateral transfer of iron to the circulation

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4724-4735

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22

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29

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Daniel Gautheret

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