CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
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MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary modelUse of ChIP-Seq data for the design of a multiple promoter-alignment methodA survey of DNA motif finding algorithmsoPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes.Patterns of intron sequence evolution in Drosophila are dependent upon length and GC content.CONREAL web server: identification and visualization of conserved transcription factor binding sites.p21-activated kinase 3 (PAK3) is an AP-1 regulated gene contributing to actin organisation and migration of transformed fibroblastsMolecular characterization of the murine homologue of the DC-derived protein DC-SCRIPTEvolutionary Footprints of Short Tandem Repeats in Avian PromotersMORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.Prediction and experimental validation of novel STAT3 target genes in human cancer cellsTranscription factor map alignment of promoter regions.WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequencesContext specific transcription factor prediction.ReAlignerV: web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequences.Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.Finding evolutionarily conserved cis-regulatory modules with a universal set of motifsAlignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.Myocyte enhancer factor 2 activates promoter sequences of the human AbetaH-J-J locus, encoding aspartyl-beta-hydroxylase, junctin, and junctateGenome-wide identification of conserved regulatory function in diverged sequencesPurifying selection in deeply conserved human enhancers is more consistent than in coding sequences.EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNANovel sequence-based method for identifying transcription factor binding sites in prokaryotic genomes.Comparative genomics of neuroglobin reveals its early originsA Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifsCBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomesA male-specific quantitative trait locus on 1p21 controlling human stature.Discriminating between HuR and TTP binding sites using the k-spectrum kernel method.MicroRNAs regulate osteogenesis and chondrogenesis of mouse bone marrow stromal cells.Computational prediction of eukaryotic phosphorylation sites.In silico characterization of the neural alpha tubulin gene promoter of the sea urchin embryo Paracentrotus lividus by phylogenetic footprinting.BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.Identification of the REST regulon reveals extensive transposable element-mediated binding site duplicationcis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers.Identifying polymorphisms in the Rattus norvegicus D3 dopamine receptor gene and regulatory region.Evolutionary Origins of Pax6 Control of Crystallin Genes.Effects of C2ta genetic polymorphisms on MHC class II expression and autoimmune diseases.SITEBLAST--rapid and sensitive local alignment of genomic sequences employing motif anchors.Recent Advances in the Computational Discovery of Transcription Factor Binding SitesFurther Evidence For the Role ofENPP1in Obesity: Association With Morbid Obesity in Finns
P2860
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P2860
CONREAL: conserved regulatory elements anchored alignment algorithm for identification of transcription factor binding sites by phylogenetic footprinting.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年学术文章
@wuu
2003年学术文章
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2003年学术文章
@zh-hans
2003年学术文章
@zh-my
2003年学术文章
@zh-sg
2003年學術文章
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2003年學術文章
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2003年學術文章
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name
CONREAL: conserved regulatory ...... by phylogenetic footprinting.
@en
type
label
CONREAL: conserved regulatory ...... by phylogenetic footprinting.
@en
prefLabel
CONREAL: conserved regulatory ...... by phylogenetic footprinting.
@en
P2860
P356
P1433
P1476
CONREAL: conserved regulatory ...... by phylogenetic footprinting.
@en
P2093
Edwin Cuppen
Ronald H A Plasterk
P2860
P304
P356
10.1101/GR.1642804
P577
2003-12-12T00:00:00Z