A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
about
The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferaseMutagenesis identifies the critical amino acid residues of human endonuclease G involved in catalysis, magnesium coordination, and substrate specificityCrohn's disease risk alleles on the NOD2 locus have been maintained by natural selection on standing variationInsights into the structure, function and evolution of the radical-SAM 23S rRNA methyltransferase Cfr that confers antibiotic resistance in bacteriaAll are not equal: a benchmark of different homology modeling programsIdentification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active siteA homology model of restriction endonuclease SfiI in complex with DNAInference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuIIComparative modelling of protein structure and its impact on microbial cell factories.The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesisStructural and functional insight into the universal stress protein familyStructural analysis of human 2′-O-ribose methyltransferases involved in mRNA cap structure formationBud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunitsThe yeast Arr4p ATPase binds the chloride transporter Gef1p when copper is available in the cytosol.Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNAStructure and intrinsic disorder of the proteins of the Trypanosoma brucei editosomeThe YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK)Bioinformatics and computational biology in PolandImproving the accuracy of template-based predictions by mixing and matching between initial modelsStructural characterization of the putative ABC-type 2 transporter from Thermotoga maritima MSB8.GeneSilico protein structure prediction meta-server.COLORADO3D, a web server for the visual analysis of protein structures.Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.Physics-based protein-structure prediction using a hierarchical protocol based on the UNRES force field: assessment in two blind tests.Protein structure prediction by tempering spatial constraints.Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure.Contact prediction in protein modeling: scoring, folding and refinement of coarse-grained modelsMetaMQAP: a meta-server for the quality assessment of protein models.The crystal structure of pyrimidine/thiamin biosynthesis precursor-like domain-containing protein CAE31940 from proteobacterium Bordetella bronchiseptica RB50, and evolutionary insight into the NMT1/THI5 familyConserved charged amino acid residues in the extracellular region of sodium/iodide symporter are critical for iodide transport activity.RNA and protein 3D structure modeling: similarities and differences.QA-RecombineIt: a server for quality assessment and recombination of protein modelsSpecificity changes in the evolution of type II restriction endonucleases: a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences.Phylogenomic analysis of the GIY-YIG nuclease superfamily.Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily.Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active siteMedaka: a promising model animal for comparative population genomicsCloning and analysis of a bifunctional methyltransferase/restriction endonuclease TspGWI, the prototype of a Thermus sp. enzyme family.
P2860
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P2860
A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年論文
@yue
2003年論文
@zh-hant
2003年論文
@zh-hk
2003年論文
@zh-mo
2003年論文
@zh-tw
2003年论文
@wuu
2003年论文
@zh
2003年论文
@zh-cn
name
A "FRankenstein's monster" app ...... ed by 3D structure evaluation.
@en
type
label
A "FRankenstein's monster" app ...... ed by 3D structure evaluation.
@en
prefLabel
A "FRankenstein's monster" app ...... ed by 3D structure evaluation.
@en
P2093
P356
P1433
P1476
A "FRankenstein's monster" app ...... ed by 3D structure evaluation.
@en
P2093
Iwona A Cymerman
Jan Kosinski
Joanna M Sasin
Marcin Feder
Michal A Kurowski
P304
P356
10.1002/PROT.10545
P407
P478
53 Suppl 6
P577
2003-01-01T00:00:00Z