Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.
about
The selection and function of cell type-specific enhancersComputational identification of diverse mechanisms underlying transcription factor-DNA occupancyEP-DNN: A Deep Neural Network-Based Global Enhancer Prediction AlgorithmOpening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions.Identification of transcription factor binding sites from ChIP-seq data at high resolution.Assessing computational methods for transcription factor target gene identification based on ChIP-seq data.Nucleosome organization in the vicinity of transcription factor binding sites in the human genome.Zelda potentiates morphogen activity by increasing chromatin accessibilityDissection of thousands of cell type-specific enhancers identifies dinucleotide repeat motifs as general enhancer features.Short DNA sequence patterns accurately identify broadly active human enhancersAbsence of a simple code: how transcription factors read the genomeMassively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution.Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning.Establishment of regions of genomic activity during the Drosophila maternal to zygotic transitionIdentification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest ModelsInteractions between pluripotency factors specify cis-regulation in embryonic stem cellsA widespread role of the motif environment in transcription factor binding across diverse protein familiesGenome-Wide Ultrabithorax Binding Analysis Reveals Highly Targeted Genomic Loci at Developmental Regulators and a Potential Connection to Polycomb-Mediated RegulationZelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation.Zelda is differentially required for chromatin accessibility, transcription factor binding, and gene expression in the early Drosophila embryo.Heterogeneity of transcription factor binding specificity models within and across cell lines.Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development.Drosophila poised enhancers are generated during tissue patterning with the help of repression.CCAT: Combinatorial Code Analysis Tool for transcriptional regulation.Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila.Transcriptional enhancers: from properties to genome-wide predictions.Assessing the model transferability for prediction of transcription factor binding sites based on chromatin accessibility.An efficient method to transcription factor binding sites imputation via simultaneous completion of multiple matrices with positional consistency.Transcription factors involved in drought tolerance and their possible role in developing drought tolerant cultivars with emphasis on wheat (Triticum aestivum L.).Enhancer-core-promoter specificity separates developmental and housekeeping gene regulation.Widespread context dependency of microRNA-mediated regulation.Stable Binding of the Conserved Transcription Factor Grainy Head to its Target Genes Throughout Drosophila melanogaster Development.EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activityReorganization of enhancer patterns in transition from naive to primed pluripotency.ConTra v3: a tool to identify transcription factor binding sites across species, update 2017.A conserved role for Snail as a potentiator of active transcription.Genome-scale functional characterization of Drosophila developmental enhancers in vivo.Integrated analysis of motif activity and gene expression changes of transcription factors.
P2860
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P2860
Uncovering cis-regulatory sequence requirements for context-specific transcription factor binding.
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
2012年论文
@zh
2012年论文
@zh-cn
name
Uncovering cis-regulatory sequ ...... transcription factor binding.
@en
type
label
Uncovering cis-regulatory sequ ...... transcription factor binding.
@en
prefLabel
Uncovering cis-regulatory sequ ...... transcription factor binding.
@en
P2860
P50
P356
P1433
P1476
Uncovering cis-regulatory sequ ...... transcription factor binding.
@en
P2093
Daria Shlyueva
J Omar Yáñez-Cuna
P2860
P304
P356
10.1101/GR.132811.111
P577
2012-04-25T00:00:00Z