Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanism - Wikidata - wikimedia - TriplyDB

Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanism

Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanism

http://www.wikidata.org/entity/Q41995001

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Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactions Molecular dynamics of the DNA-binding domain of the papillomavirus E2 transcriptional regulator uncover differential properties for DNA target accommodation.MD simulations of papillomavirus DNA-E2 protein complexes hints at a protein structural code for DNA deformation.DNA structures from phosphate chemical shifts.DNA conformational transitions inferred from re-evaluation of m|Fo| - D|Fc| electron-density maps.Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides.Evolutionary and biophysical relationships among the papillomavirus E2 proteins.Switching control of expression of ptsG from the Mlc regulon to the NagC regulon.Insights on protein-DNA recognition by coarse grain modelling Magnitude and direction of DNA bending induced by screw-axis orientation: influence of sequence, mismatches and abasic sites.Characterization of the papillomavirus alpha(1)E2 peptide unfolded to folded transition upon DNA binding.DNA conformational flexibility study using phosphate backbone neutralization model.

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Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanism

http://www.wikidata.org/entity/Q41995001

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B Hartmann

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D Djuranovic

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P2860

NF-kappa B binding mechanism: a nuclear magnetic resonance and modeling study of a GGG --> CTC mutation

The structural basis of DNA target discrimination by papillomavirus E2 proteins

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

The structure of B-helical C-G-A-T-C-G-A-T-C-G and comparison with C-C-A-A-C-G-T-T-G-G. The effect of base pair reversals

Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG

Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein

BII nucleotides in the B and C forms of natural-sequence polymeric DNA: A new model for the C form of DNA

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

The role of flexibility and hydration on the sequence-specific DNA recognition by the Tn916 integrase protein: a molecular dynamics analysis.

E2 polypeptides encoded by bovine papillomavirus type 1 form dimers through the common carboxyl-terminal domain: transactivation is mediated by the conserved amino-terminal domain.

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