Loop motions of triosephosphate isomerase observed with elastic networks.
about
Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained ModelsPerturbation of the Dimer Interface of Triosephosphate Isomerase and its Effect on Trypanosoma cruziProbing the flexibility of large conformational changes in protein structures through local perturbationsMethod for identification of rigid domains and hinge residues in proteins based on exhaustive enumeration.ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution.Enzymatic catalysis of proton transfer at carbon: activation of triosephosphate isomerase by phosphite dianion.Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.Rationale for more diverse inhibitors in competition with substrates in HIV-1 protease.Studying functional dynamics in bio-molecules using accelerated molecular dynamics.Coupling between catalytic loop motions and enzyme global dynamicsA coarse-grained elastic network atom contact model and its use in the simulation of protein dynamics and the prediction of the effect of mutationsSimilarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulationThe importance of slow motions for protein functional loops.Protein elastic network models and the ranges of cooperativityFocused functional dynamics of supramolecules by use of a mixed-resolution elastic network model.Dealing with structural variability in molecular replacement and crystallographic refinement through normal-mode analysis.SwarmDock and the use of normal modes in protein-protein docking.The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality.How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase DynamicsThe Extent of Cooperativity of Protein Motions Observed with Elastic Network Models Is Similar for Atomic and Coarser-Grained Models.Altered dynamics upon oligomerization corresponds to key functional sites.Conventional NMA as a better standard for evaluating elastic network models.Collective dynamics of EcoRI-DNA complex by elastic network model and molecular dynamics simulations.Bridging between normal mode analysis and elastic network models
P2860
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P2860
Loop motions of triosephosphate isomerase observed with elastic networks.
description
2006 nî lūn-bûn
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2006年の論文
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2006年学术文章
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2006年学术文章
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name
Loop motions of triosephosphate isomerase observed with elastic networks.
@en
Loop motions of triosephosphate isomerase observed with elastic networks.
@nl
type
label
Loop motions of triosephosphate isomerase observed with elastic networks.
@en
Loop motions of triosephosphate isomerase observed with elastic networks.
@nl
prefLabel
Loop motions of triosephosphate isomerase observed with elastic networks.
@en
Loop motions of triosephosphate isomerase observed with elastic networks.
@nl
P2860
P356
P1433
P1476
Loop motions of triosephosphate isomerase observed with elastic networks
@en
P2093
Pemra Doruker
Robert L Jernigan
P2860
P304
P356
10.1021/BI0518085
P407
P577
2006-01-01T00:00:00Z